Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1954 ATGGCTATGCTCCAATCATCTTCCTCTTTCTCTTCATTCTCTTATGGATTCACCTATGACGTGTTTCTTAATTTTAGGGGCACCGACACTCGGTATGGTTTTACTGGAAATCTCTACAAAGCTCTTTGTGACGGAGGAGTCCGCACCTTCATTGACCATAAAGATCTTCATGAAGGTGATAGAATCACACAATCCCTTGTCAAGGCCATCGAAGAGTCCAGGATTTTAATTCCGGTCTTCTCTAAGAACTATGCTTCTTCTTTGTTTTGTTTGGATGAACTTGTCCACATCATTCACCGTTACGAAGAAAAGGGTTGCTTCGTTTTTCCTATTTTTTGTGACGTGGAACCTTCTCACGTGCGACATCAGACGGGGAGTTATGGTGAAGCATTAGCTAAGCATGAAGAGAGGTTCCAAAATAACAAAGAAAATTACAACGACAACATGAAGAGGCTGCATAAATGGAAGATGGCTCTTAACCAAGCAGCTAACTTGTCCGGCCACCATTTCAATCCTAGGAATGGATATGAATTCGAGTTTATTCGGGAAATAGTCAAATATGTATCCAACAAATTGAATCATGTCCTTTTACATGTTGTTGATTACCCCGTTGGCCTACAACATCGAGTTTTAAAAGTAAACTCACTTCTAAAAGTTGGATCTAATGATAAAGTCAAGATGCTTGGGATCTATGGACCAGGAGGGATAGGTAAGACAACACTTGCAAAAGCGGTTTATAATTTCATTGCTGGTCAATTTGAATGTGTCTGTTTCCTTCACAATGTGAGAGAAAATTCAGCAAAACATGGCTTAGAGCATCTCCAAAAAGATTTGCTTTCCAAGATTGTTGGATTGGACATTAAGTTAGCAGATACTAGTGAGGGAATTCCAATCATAAAACAAAGGCTACAACAAAAGAAGGTTCTATTGATTCTCGACGACATTAATAAATTGAAGCAGCTGCAAGCTATGGCTGGAGGGACTGATTGGTTTGGTGCTGGCAGTAGAGTGATTGTTACCACTCGAGATAAAAACTTGCTAGCAAGTCATGGGATTGAAGTAACATATGAAACACACGAGTTAAACAAGAAAGAAGCCCTTGAATTGCTTAGGTGGAAGGCTTTTAAAGCTAAACAAGTTGATTCAAGTTATGAGTGTATTTTAAACCGTGCAATAAATTATGCTGCTGGCCTTCCATTGGCCTTGGAAATATTAGGTTCCAACTTGTATGGAAAGCATATAGAAGAATGGAATTCTTTGTTGGATCGATATGAAAGAATTCCTAGTGAAGAGATTCAAAAAATACTTCGTGTGAGTTTTGATGCTTTGGAGGAAGATGAGAGGAGTGTTTTTCTCGACATTGCTTGTTGCTTCAAAGGGTATAAATTGAAAGAGGTGGAAGATATGCTTTGTGCTCATTACGGTCAACGCATGAGATATCACATTGGAGTGTTGGTTAAAAAATCTCTTGTGAAGATTATTAATGAGCGCTTTGTGACATTACATGACTTGATAGAAGACATGGGTAAAGAAATTGTAAGACAAGAATCACCAAAAGAACCTGGAAAACGTAGCAGGTTGTCGTTCCATGAAGATATATTTCAAGTTTTAGAAGAAAATTCAGGAACAAGTCAAATTGAAATCATACGTTTGGATTTTCCACTACCTCAAGCAATTGTAGAGTGGAAAGGAGATGAATTAAAGAAGATGAAAAACCTTAAAACACTTATCGTTAAAACTAGTTTCTTTCCCAAACCTCATGTACATCTTCCAGATAATTTAAGAGTACTGGAATGGCATAGTTTACGGGATATACCATCTGAATTTCTTCCAAAGAATCTTTCCATATGCAAGTTACGCAAAAGTTGCCCTACGTCATTTAAGATGTTCATGGTTTTGAAAGTTTTACATTTAGACGAGTGTAAACGTCTAAGAGAAATAAGTGACGTATCTGGTCTCCAAAATTTAGAAGAATTTTCATTTCAAAGGTGTAAGAAATTACGTACAATTCATGATTCTATTGGGTTCCTGAATAAACTTAAAATCTTAAATGCGGAAGGTTGTAGGAAGCTCAAGAGTTTTCCACCCATTCAATTGACCTCTCTGGAACTACTTAGACTGTCATATTGTTATAGGCTTAGGAACTTTCCAGAAATATTAGGAAAGATGGAAAACCTAGAAAGCATTTTTTTGAAAGAGACATCCATAAAAGAATTGCCTAATTCATTTCAAAATCTCAGCGGGCTTCGAAATTTACTCTTAGATGGATTTAGAATGTTTCTTAGGTTACCAAGTAGCATTCTCGTGATGCCAAAATTGTCTTGGGTTCTTGTTCAGGGTCGCCATCTATTGCCAAAACAATGTGATAAACCAAGTTCCATGGTGTCCTCAAATGTAAAATCTCTTGTGCTAATAGAATGCAACCTAACAGGTGAATCTCTTCCAATAATTTTTAAGTGGTTTGCTAATGTGACAAATTTAAACTTATCAAAAAGTAATATCACAATTCTTCCGGAATGCATCAAAGAACTTCGTTCCTTAGAGAGACTCTATCTGGATTGTTGCAAGCTTCTTCAAGAAATTAGAGCAATTCCACCAAATTTAAAATTCTTGTCTGCGATAAATTGCGAGTCTTTGAGTTCCTCATGTAGAAGCATGCTACTGGATCAGGAACTGCATGAAGTTGGAGACACCATGTTTCGATTGCCAGGAACTTTAAGGATTCCAAGGTGGTTTGAGCACCAAAGCACACGACAGCCAATTTCTTTCTGGTTTCATAACAAGCTCCCTTCCATTTCTCTCTTCTGTACTATTGGATGTAAATACCACCCGAACGTTACATCTATTTTCTCCTTTTTCAAAATAACCATCAATGGCTATGAATGCTTTCGTGAAGGTCCAACTAATTTTCCTTATATTAAAATTGAAGCCAATCATACATATCTAGTTGGTTTGAAACTACTAGACCTGGACAGATTGGGTGAAGCATTTTTAAAAAGGGAATGGAACCATGCGGTGGTTACATGTGATATTTCAACTGTGCCATTTGACCTTAAGGAAAGTCGAATGCACATATTTAAACAAGAAAGTAGAATGGAGGATATTCAGTTCACCAATCATTATAAAAAGAGAGAATTAGTTGATGATGATGATGATGATGATGATGAGGAGGAGGAGGAGGAGGATGTTGTTGATGTTCTTGATGATGACCACCACCATTCACAATAG 3228 0.3727 MAMLQSSSSFSSFSYGFTYDVFLNFRGTDTRYGFTGNLYKALCDGGVRTFIDHKDLHEGDRITQSLVKAIEESRILIPVFSKNYASSLFCLDELVHIIHRYEEKGCFVFPIFCDVEPSHVRHQTGSYGEALAKHEERFQNNKENYNDNMKRLHKWKMALNQAANLSGHHFNPRNGYEFEFIREIVKYVSNKLNHVLLHVVDYPVGLQHRVLKVNSLLKVGSNDKVKMLGIYGPGGIGKTTLAKAVYNFIAGQFECVCFLHNVRENSAKHGLEHLQKDLLSKIVGLDIKLADTSEGIPIIKQRLQQKKVLLILDDINKLKQLQAMAGGTDWFGAGSRVIVTTRDKNLLASHGIEVTYETHELNKKEALELLRWKAFKAKQVDSSYECILNRAINYAAGLPLALEILGSNLYGKHIEEWNSLLDRYERIPSEEIQKILRVSFDALEEDERSVFLDIACCFKGYKLKEVEDMLCAHYGQRMRYHIGVLVKKSLVKIINERFVTLHDLIEDMGKEIVRQESPKEPGKRSRLSFHEDIFQVLEENSGTSQIEIIRLDFPLPQAIVEWKGDELKKMKNLKTLIVKTSFFPKPHVHLPDNLRVLEWHSLRDIPSEFLPKNLSICKLRKSCPTSFKMFMVLKVLHLDECKRLREISDVSGLQNLEEFSFQRCKKLRTIHDSIGFLNKLKILNAEGCRKLKSFPPIQLTSLELLRLSYCYRLRNFPEILGKMENLESIFLKETSIKELPNSFQNLSGLRNLLLDGFRMFLRLPSSILVMPKLSWVLVQGRHLLPKQCDKPSSMVSSNVKSLVLIECNLTGESLPIIFKWFANVTNLNLSKSNITILPECIKELRSLERLYLDCCKLLQEIRAIPPNLKFLSAINCESLSSSCRSMLLDQELHEVGDTMFRLPGTLRIPRWFEHQSTRQPISFWFHNKLPSISLFCTIGCKYHPNVTSIFSFFKITINGYECFREGPTNFPYIKIEANHTYLVGLKLLDLDRLGEAFLKREWNHAVVTCDISTVPFDLKESRMHIFKQESRMEDIQFTNHYKKRELVDDDDDDDDEEEEEEDVVDVLDDDHHHSQ* 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1954 1075 SMART till_3 18 165 IPR000157 GO:0007165
Mtr6g1954 1075 SMART AAA_5 224 358 IPR003593 -
Mtr6g1954 1075 PRINTS Disease resistance protein signature 227 242 - -
Mtr6g1954 1075 PRINTS Disease resistance protein signature 302 316 - -
Mtr6g1954 1075 PRINTS Disease resistance protein signature 395 409 - -
Mtr6g1954 1075 PRINTS Disease resistance protein signature 697 713 - -
Mtr6g1954 1075 Gene3D - 17 193 IPR035897 -
Mtr6g1954 1075 MobiDBLite consensus disorder prediction 1043 1075 - -
Mtr6g1954 1075 Gene3D - 360 444 IPR042197 -
Mtr6g1954 1075 MobiDBLite consensus disorder prediction 1048 1065 - -
Mtr6g1954 1075 Gene3D Ribonuclease Inhibitor 523 711 IPR032675 -
Mtr6g1954 1075 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 1008 IPR044974 GO:0006952
Mtr6g1954 1075 SUPERFAMILY L domain-like 558 883 - -
Mtr6g1954 1075 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 454 IPR027417 -
Mtr6g1954 1075 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 167 IPR035897 -
Mtr6g1954 1075 CDD AAA 230 343 - -
Mtr6g1954 1075 ProSiteProfiles TIR domain profile. 17 192 IPR000157 GO:0007165
Mtr6g1954 1075 PANTHER ARCHAEAL ATPASE 29 1008 - -
Mtr6g1954 1075 Pfam TIR domain 19 195 IPR000157 GO:0007165
Mtr6g1954 1075 Gene3D Ribonuclease Inhibitor 712 895 IPR032675 -
Mtr6g1954 1075 Pfam NB-ARC domain 217 441 IPR002182 GO:0043531
Mtr6g1954 1075 SUPERFAMILY "Winged helix" DNA-binding domain 431 538 IPR036390 -
Mtr6g1954 1075 Gene3D - 194 354 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1954 Mtr-Chr6 35610295 35614541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1954 10 850 WRKY Transcription Factor Family AT4G12020 28.490 1.96e-73 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1954 - - gmx:100780257 1107.82