Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1952 ATGGCTGGCAATCAAGCTCCAAGCTATTTTGTGTGGGAAGTCCTTTTTACAATGTGCATCATGGCGTTGGGACTCTTGCTTCTAGCACTTCTCATCGGAAACATACAGGGCTTTTTTCAGTCTCTTGGCATGAGGAGGCTAGAAATGATATGTAGAGGCCGCGATGTTGAGCAATGGATGAGAGGTCGTCGTTTACCAGAAGATCTCAAAAGGAGAGTACGAGTGGCTGAATGGTATAGTTGGCATGCAACAATGGGTGTTCCTGAGAGTATGGTTCTCAAGAATTTGCCAGAAGATCTCCAGACAGACATAAGACGCCATCTCTACAAATTTGTTAATAAAGTTCCAATTTTGTCTCTGATGGATGGGGGTGAACCTTTCTTAGACGCCATTCGTGAGAGACTAATACAGACGACATACATTAAAGGAAGTAGAATTCTCAGTCAGGGTGATCTTGTACAGAAGATGGTGTTTATTATGCGTGGAAAATTAGAGAGCGTCGGAGAAGATGGAAGTTCGGTTATGTTATCAGAAGGGGATGCTTGTGGTGAAGAACTTCTAAGATGGTATCTTGAACAGTCTTCTGAAAGCAAAGAAGGTAAGCAAGTAAAGATTCAAGAACATGACTTAATTAGTGACAGAACAGTAAGATGCTTAACCAATTTGGAGGCATTTTCACTCGACGCTAAAGACATTGAAGAAGTCACAACTCGTTTTTCAAGATTCTTGCAGAGCCCTCGCGTTCAACAAGTCATAAGGTATGAATCACCTTATTGGAGATTCCTTGCAGCAAAAAGAATTCAGGATGCATGGAGAAACATGAAGAAGTGTCTAAGTCAAGCTAATACCACACAAAATGATTATCAAACATTAAGGCATGAATCGCCTTATGGGAAATCACATAGACCAAACAGAATTCAGATAGCATGGAGAAACAGGAAGAAGAGTCTAAGACGAGCTAATGCCACACAGTGA 975 0.4133 MAGNQAPSYFVWEVLFTMCIMALGLLLLALLIGNIQGFFQSLGMRRLEMICRGRDVEQWMRGRRLPEDLKRRVRVAEWYSWHATMGVPESMVLKNLPEDLQTDIRRHLYKFVNKVPILSLMDGGEPFLDAIRERLIQTTYIKGSRILSQGDLVQKMVFIMRGKLESVGEDGSSVMLSEGDACGEELLRWYLEQSSESKEGKQVKIQEHDLISDRTVRCLTNLEAFSLDAKDIEEVTTRFSRFLQSPRVQQVIRYESPYWRFLAAKRIQDAWRNMKKCLSQANTTQNDYQTLRHESPYGKSHRPNRIQIAWRNRKKSLRRANATQ* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1952 324 CDD CAP_ED 117 235 IPR000595 -
Mtr6g1952 324 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 284 - -
Mtr6g1952 324 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 288 322 - -
Mtr6g1952 324 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 288 322 - -
Mtr6g1952 324 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 1 284 - -
Mtr6g1952 324 Gene3D Helix hairpin bin 52 109 - -
Mtr6g1952 324 Gene3D Jelly Rolls 115 241 IPR014710 -
Mtr6g1952 324 ProSiteProfiles cAMP/cGMP binding motif profile. 127 187 IPR000595 -
Mtr6g1952 324 SUPERFAMILY cAMP-binding domain-like 53 243 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1952 Mtr-Chr6 35587171 35592139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1952 1 195 Ion Channels AT3G17700 64.615 1.96e-70 229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1952 6 35587171 35592139 Mtr6g1952 6 35587171 35592139 ECH