Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1950 ATGAATTTGAATCTCTCCATTAAGCTTATATCTACAAAAAAAAAAAAGCTCTCAAGCTTATTTACCTATGACATAAATCTTCATCTCTGTCATCCTGTGGTTTATAACTCGGTTTCTCTTGTAGAAAGTAAAAATGTAAAGATTCAAGGACAGGGCTTAACTAGTGACAGAACGGTAAAATGCTTAACCAATGTTGAGGCATTTTCACTCGACGCTAAAGACATTGAAGAAGTCACAACTCATTTTGCAAGATTCTTGCGGAGCCCTCGCGTTCAACAAGTCATAAGGTATCAATCACCTTATTGGAGATCACTTGCAGCAAACAGAATTCAGGTTGCATGGAGAAGCAGGAAGAAGCGTCTAAGACGAGCTAATACCACACAAAATTATTATCAAACATTGAGGTCATAG 411 0.3723 MNLNLSIKLISTKKKKLSSLFTYDINLHLCHPVVYNSVSLVESKNVKIQGQGLTSDRTVKCLTNVEAFSLDAKDIEEVTTHFARFLRSPRVQQVIRYQSPYWRSLAANRIQVAWRSRKKRLRRANTTQNYYQTLRS* 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1950 136 Gene3D Jelly Rolls 29 84 IPR014710 -
Mtr6g1950 136 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 37 128 - -
Mtr6g1950 136 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 37 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1950 Mtr-Chr6 35562811 35563806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1950 54 127 Ion Channels AT4G30360 44.595 2.00e-12 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1950 K05391 - mtr:MTR_6g075460 190.274