Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1949 ATGAATCATTTTGATAAAGATGAAATTCTGATTCTGTCAGAAACACATGTTCAACGATCTCATGAACCTCAGGATTCTACCTTCCGAAGAAACATATCGAGGACACGAAGTGCTTCAATCTCTATTCCTATGGCTTCTCTGGAACCATACGAGAGACAACCGAATCTTGTTCGCACCACAAGGAAAACTCCGATTAGCCAAATGAGTGGTCCACTATATGCTACTGCGGCAACTGGAAATCCTTTTCAGAATACTATGATAGTGACAGAAAATTTTTCTACATTCGATGGCATGGATAAAAATGAACACTTGTTGAGGTCTGGACAACTGGGAATGTGTAATGATCCTTATTTTACTACATGCCCTACTCACTTCAAAGTTCCTCAGCAAAGAAAACCAAGAGCTTCCACTATATTTGATCCCAAGTTCCACAATTCTCTTTATGGTGACACCAAAGGTTATGGAAGAAAACTTTTTTCTTTCTGTTCTTCGTGTATTCCTGGTGTTATGAACCCCCATGCGAAAGTTGTACAACAATGGAACAAGTTTTTGGCCATATTTTGCATAGTCGCAATTTATGTTGATCCGTTATTTTTCTTCTTATTCTATGTGAACAAGGATAATAAATGTATTCGAATCGACATGCCAATGGCAACAACACTTGTTGTACTTAGAAGTATAACTGATGTTGTTTATCTCTTGAACATTCTTTTTCAGTTTAGGTTGGCTTATGTTTCTCCTGAGTCTAGGGGTGCTGGTGCTGGTGATTTAGTTTACCATCCCAAGAAAATAGCTGCTAATTACTTTAAGAGCTACTTATTCTTTGACGTATTTGTTGTATTACCTCTTCCTCAGATAATGATATTGATTGTCCTACCAAATTCCTTGGGGTCTTCACAAGCAATTTATGCCAAGAATCTTCTAAGTCTAGTGATCTTTGTACAGTTAATTGCAAAATTATTCAGATTTTTGCCTTGGGTAATTGGCCGGTCTTCAACCCGAATCATATATGAGTCAGCCTGGGCAAATTTAGCTGTAGGTCTTCTCGTTTTTTTGCTCTCTGCCCATGTTGTTGGTTCATGCTGGTACCTCTTTGGTCTAGAGAGAGTTAACCAGTGTTTGCAACATGCCTGCCATCTTGCCAAACTACCTGGATGCATGAACTTGATTGATTGTAATTCTAGATGGTGGAATATATCAGCTACATGGAGTGATGATAAGGGTGCCGATGCTTGTTTGAATTCCACATCTGGTGCTATTAATTATGGAATATATGCCAATGCTGTACAACTTACTATAGAAACTACGGTGGCCAAGAAATATATGTATGCAGTCTTTTGGGGATTCCAGCAAATCATTACTCTGGCTGGTAATCAAACTCCAAGTAATTCTTCGTGGGAAATCCTCTTTACAATGTCCATCATGGTATTGGGACTCTTGTACCTTGCGCATCTCATTGGCACCATACAGACCTCTAATCAGTCTCTTGCACAGAGGAAGGTAGAAATGCAACTTAGAGGCCGTGATGTTGAGCAATGGATGAGCCATCGTCGCTTACCAGAAGATCTCAAAAGGAGAGTACGACAGGCTGAACAGTATAGTTGGGCTGCAACAAGAGGTGTTTCTGAGAAAATGGTTCTGGAGAATTTGCCAGAAGATCTCCAGACAGACATACGACGTCATCTCTTCAAATTTGTTAAAAATATTCGATTTTTTTCCCTAATGGATGAGGATGAGCCTATCTTAGATGCCATTCGTGAACGACTAGTACAGACGACATACATTGAAGGAAGTATAGTTTTTAGTCAGGGTGGTCTCATACAGAAGATGGTTTTTATTGTTCGTGGAAAAATGGAGAGCATTGGAAAAGATGAAATTCCGGTTCTGTTATCGGAAGGGGATGCTTCTGGTGAAGAGCTTCTAACATGGTATCTTGAACAGTCTGCTAAAAGTAAAGACGGTAAAAAAGTAAAGATTCGAGGACATGGCTTAACTAGTGACAGAACAGTAAAATGCTTAACCAATGTGGAGGCATTTTCACTCGACGCTAAAGACATTGAGGAAGTCACAACTCTGTTTTCAAGATTCTTGCGGAGCCCTCACGTTCAACAAGTCATAAGGTATCAATCACCTTATTGGAGATCACTTGCAGCAAACAGAATTCAGGTTGCATGGAGCAATAGGAAGAAGCGTCTAAGTCAAGCTAATACCACACAAAATAATTATCAAACATCGTGGCATGAATCGCCTTATGGGAAATCAGATAGACCAAACAGAATTCAGATAGCATGGAGAAACAGGAAGAAGCGTCTAAGACGAGCTAATACCACACAATGA 2337 0.3967 MNHFDKDEILILSETHVQRSHEPQDSTFRRNISRTRSASISIPMASLEPYERQPNLVRTTRKTPISQMSGPLYATAATGNPFQNTMIVTENFSTFDGMDKNEHLLRSGQLGMCNDPYFTTCPTHFKVPQQRKPRASTIFDPKFHNSLYGDTKGYGRKLFSFCSSCIPGVMNPHAKVVQQWNKFLAIFCIVAIYVDPLFFFLFYVNKDNKCIRIDMPMATTLVVLRSITDVVYLLNILFQFRLAYVSPESRGAGAGDLVYHPKKIAANYFKSYLFFDVFVVLPLPQIMILIVLPNSLGSSQAIYAKNLLSLVIFVQLIAKLFRFLPWVIGRSSTRIIYESAWANLAVGLLVFLLSAHVVGSCWYLFGLERVNQCLQHACHLAKLPGCMNLIDCNSRWWNISATWSDDKGADACLNSTSGAINYGIYANAVQLTIETTVAKKYMYAVFWGFQQIITLAGNQTPSNSSWEILFTMSIMVLGLLYLAHLIGTIQTSNQSLAQRKVEMQLRGRDVEQWMSHRRLPEDLKRRVRQAEQYSWAATRGVSEKMVLENLPEDLQTDIRRHLFKFVKNIRFFSLMDEDEPILDAIRERLVQTTYIEGSIVFSQGGLIQKMVFIVRGKMESIGKDEIPVLLSEGDASGEELLTWYLEQSAKSKDGKKVKIRGHGLTSDRTVKCLTNVEAFSLDAKDIEEVTTLFSRFLRSPHVQQVIRYQSPYWRSLAANRIQVAWSNRKKRLSQANTTQNNYQTSWHESPYGKSDRPNRIQIAWRNRKKRLRRANTTQ* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1949 778 CDD CAP_ED 571 689 IPR000595 -
Mtr6g1949 778 MobiDBLite consensus disorder prediction 732 758 - -
Mtr6g1949 778 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 739 - -
Mtr6g1949 778 SUPERFAMILY cAMP-binding domain-like 498 695 IPR018490 -
Mtr6g1949 778 Pfam Ion transport protein 182 499 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr6g1949 778 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 739 - -
Mtr6g1949 778 Gene3D - 181 494 - -
Mtr6g1949 778 MobiDBLite consensus disorder prediction 732 751 - -
Mtr6g1949 778 Gene3D Helix hairpin bin 497 563 - -
Mtr6g1949 778 Gene3D Jelly Rolls 569 695 IPR014710 -
Mtr6g1949 778 ProSiteProfiles cAMP/cGMP binding motif profile. 573 649 IPR000595 -
Mtr6g1949 778 SUPERFAMILY Voltage-gated potassium channels 175 494 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1949 Mtr-Chr6 35540338 35552584 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1949 2 649 Ion Channels AT3G17700 51.105 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1949 K05391 - gmx:100794895 985.326