Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1948 ATGGGTTTTATTGTTCGTGGAAAATTGGAGAGCATCGGAAAAGATGGAATTCCGGTTTTGTTATCCGAAGGGGATGCTTTTGGTGAGGAGCTTCTAATATGGTATCTTGAACGGTCTTCTGAAAGCAAAGAAGGTAAAGAAGTAAAGATTCAAGGACATGGCTTAACTAGTGACAGAACAGTAAAATGCTTAACCGATGTGGAGGCATTTTTACTCGACGCTAAAGCTATTGAAGAAGTCACAACTCATTTTGCAAGACTCTTACAAAATCCTCACGTTCAACAAGTCATAAGGTATCAATCACCTTATTGGAGATCACTTGCAGCAAAGGTAATTCAGGATGCATGGAGAAACATGAAGAAGTGTCTAATTCAAGCTAATGCCACACAAAATGATTATCAAACATTGAGGTATGAATCGCCTTATGGGAAATCACATAGACCAAACAGAATTCAGGTTGCATGGAGAAGTAGGAAGAAGCGTCTAAGACGAGCTAATACCACAAAATGA 510 0.3902 MGFIVRGKLESIGKDGIPVLLSEGDAFGEELLIWYLERSSESKEGKEVKIQGHGLTSDRTVKCLTDVEAFLLDAKAIEEVTTHFARLLQNPHVQQVIRYQSPYWRSLAAKVIQDAWRNMKKCLIQANATQNDYQTLRYESPYGKSHRPNRIQVAWRSRKKRLRRANTTK* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1948 169 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 133 168 - -
Mtr6g1948 169 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 1 129 - -
Mtr6g1948 169 Gene3D Jelly Rolls 1 86 IPR014710 -
Mtr6g1948 169 ProSiteProfiles cAMP/cGMP binding motif profile. 1 40 IPR000595 -
Mtr6g1948 169 SUPERFAMILY cAMP-binding domain-like 1 87 IPR018490 -
Mtr6g1948 169 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 133 168 - -
Mtr6g1948 169 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1948 Mtr-Chr6 35532516 35535007 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1948 1 117 Ion Channels AT1G19780 44.715 4.60e-20 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1948 K05391 - gsj:114390051 162.155