Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1945 ATGAATGATTTTGAAAAAGATGAAATTACGATTCTTTCAGAAAAACGTCCACAACCATCCGAGCAGCATCAGGACTCCAACTTCCAAAGGAACATATCGAGGACACAAAGCGCTTCAGTTTTTATTCCTATGGCTTCCCTTGATCCATATGAGAGACAACCGAATCTTGTCAGACACACCGCGAGGAATTCTCCGATTAGCCAAATGAGTGGTCCACTATATGCTACTCCTGCAACTGGAAATATAGTAGTGGCGGGAAACAAGTTTCACAATTTTCTCTATGGCGACGCCAATTGTTTCGGAAGAAAACTTTTATCTTTTTGCTCTTCATGTATTCCTAGAGTTATGAACCCTCACTGTAAAGTCGTACAACAATGGAACACAATTTTTGCTATATCTTGCTCAGTCGCAATTTTTTTTGATCCGTTATTTTTCTTCTTATACTATGTGAACAAGGATGATAAATGTATTGTTATCAATTGGACAATGGCAACATTACTTTCTTTACTTCGAAGCATAATGGATGTCCTGTATTTTTTGAACATTCTTCTCCAATTCAGGTTGGCTTACATTAATCCTGAGTATAAGGGCATTGGTGCTGCAGATTTAGTTGACCATCCCACGAGAATTGCTCATAACTACTTGAAGGGTTACTTTTTTATCGACTTATTTGTTGCATCACCTCTTCCTCAGATAATGATATTGCTTTCCTTGGGGTCTTTAGTAGCACATAATACTAAGAATCTTCTACCTCTAGTGATCTCTTTACAGTACATTCCAAAATTATATAGATATTGTTCGCTCTTAATAGGCCAATCTCCAACTCCATTCATATTTGCGTCAGGCGGGGCATATTTAACTATAGGTCTTCTCACCTTTATGTTCTTTGGCCATGTTGTTGGTTCATGCTGGTACCTTTTTGGTCTACAGAGGGTTAACCAATGTTTGCGAGATGCCTGCCATCATTCTAATCTACTTGGATGCATGGACTTGATTGATTGTGATTCTAAAGTGGGGAATATATCAGCCACATTATGGAGTGAAGACAAGAGTGCTGATGCTTGTTTGAATGCCACATCTGGTGCTTTTTCTTATGGAATTTATGGCAATGCCATACCACTTACTATAGAAACTAAGGTGATCAACAAATATGTGTATGCACTCTTTTGGGGATTCCAGCAAATCATTACTCTGGCTGGTAATCAAACTCCAAGCTATTTTGTGTGGGAAGTCCTCTTTACAGTTTCCATCATGGCATTGGGACTCATACTTCTAGCCCTTCTCATCGGAAACATACAGGGATTTTTTCAGACTCTTGGCAAGAGAAGCCTGGAATGGTTAAGTAGAGGCTCTGATGTTGAGCAATGGATGAGCCGTCGTCACTTACCGGAAAATCTCAAAAGGAGAGTACGGCAGGCTGAACGGTATAGTTGGGCTGCAACAAGGGGTGTTTCTGAGAAAATGATTTTGGAGAATTTGCCAGAAGATCTCCAAATAGACATACGACGTCATATCTTCAAATTCGTTAAAAAAGTTCCAATTTTTTCCCTAATGGATGAGAATGAGCCTATCTTAGATGCCATCCTTGAGCGACTAATACATACGATGTACAACAGAGGAAGTAGGATTTTGAGTCAGGGTTGTCTCATACAGAAGGTGGTGTTTATCGTGCGTGGAAAATTGGAGAGCATCGGAGAAGATGGAATTCCGGTTACGTTAACTGAAGGGGATGCTTGTGGTGAAGAGCTTCTACGATGGTATCTTGAACGATCTTCTAAAAGCAAAGAAGGTAAAAAAGTAAAGCTTCAAGGATGGGGCTTAACTAGTACCAGATCAGTAAAATGCTTAACCAATGTGGAGGCATTTTCACTCCGCGTTAAAGACATTGAAGAACTCGCAACTCTTTTTGCAGGATTCTTGCGGAGCCCTCACACTCAAGGAGTCATAAGGAATGAATCGCCTTATGGGAAATCATATAGAGCAAACAAAATTCAGATTGCATGGATAAACAGGAAGAAGCATCTAAGACGAGCTAATGCCACACAATGA 2049 0.3997 MNDFEKDEITILSEKRPQPSEQHQDSNFQRNISRTQSASVFIPMASLDPYERQPNLVRHTARNSPISQMSGPLYATPATGNIVVAGNKFHNFLYGDANCFGRKLLSFCSSCIPRVMNPHCKVVQQWNTIFAISCSVAIFFDPLFFFLYYVNKDDKCIVINWTMATLLSLLRSIMDVLYFLNILLQFRLAYINPEYKGIGAADLVDHPTRIAHNYLKGYFFIDLFVASPLPQIMILLSLGSLVAHNTKNLLPLVISLQYIPKLYRYCSLLIGQSPTPFIFASGGAYLTIGLLTFMFFGHVVGSCWYLFGLQRVNQCLRDACHHSNLLGCMDLIDCDSKVGNISATLWSEDKSADACLNATSGAFSYGIYGNAIPLTIETKVINKYVYALFWGFQQIITLAGNQTPSYFVWEVLFTVSIMALGLILLALLIGNIQGFFQTLGKRSLEWLSRGSDVEQWMSRRHLPENLKRRVRQAERYSWAATRGVSEKMILENLPEDLQIDIRRHIFKFVKKVPIFSLMDENEPILDAILERLIHTMYNRGSRILSQGCLIQKVVFIVRGKLESIGEDGIPVTLTEGDACGEELLRWYLERSSKSKEGKKVKLQGWGLTSTRSVKCLTNVEAFSLRVKDIEELATLFAGFLRSPHTQGVIRNESPYGKSYRANKIQIAWINRKKHLRRANATQ* 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1945 682 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 103 680 - -
Mtr6g1945 682 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 83 - -
Mtr6g1945 682 MobiDBLite consensus disorder prediction 1 30 - -
Mtr6g1945 682 Gene3D Helix hairpin bin 444 506 - -
Mtr6g1945 682 Gene3D Jelly Rolls 512 637 IPR014710 -
Mtr6g1945 682 ProSiteProfiles cAMP/cGMP binding motif profile. 516 592 IPR000595 -
Mtr6g1945 682 Pfam Ion transport protein 128 442 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr6g1945 682 SUPERFAMILY cAMP-binding domain-like 442 635 IPR018490 -
Mtr6g1945 682 MobiDBLite consensus disorder prediction 1 21 - -
Mtr6g1945 682 Gene3D - 117 439 - -
Mtr6g1945 682 PRINTS EAG/ELK/ERG potassium channel family signature 171 181 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr6g1945 682 PRINTS EAG/ELK/ERG potassium channel family signature 182 191 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr6g1945 682 PRINTS EAG/ELK/ERG potassium channel family signature 384 401 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr6g1945 682 PRINTS EAG/ELK/ERG potassium channel family signature 410 421 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr6g1945 682 PRINTS EAG/ELK/ERG potassium channel family signature 428 437 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr6g1945 682 PRINTS EAG/ELK/ERG potassium channel family signature 478 485 IPR003938 GO:0005249|GO:0006813|GO:0016020
Mtr6g1945 682 SUPERFAMILY Voltage-gated potassium channels 122 441 - -
Mtr6g1945 682 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 83 - -
Mtr6g1945 682 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 103 680 - -
Mtr6g1945 682 CDD CAP_ED 514 641 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1945 Mtr-Chr6 35508078 35520337 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1945 48 592 Ion Channels AT3G17700 54.430 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1945 K05391 - gmx:100794895 785.408