Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1940 ATGAATCATTTTGAAAAAGATGAAATTACGAATCTGTCAGAAACACATCCACAACGATCCGATGAATCTGAGAATTCTAACTTCCAAAGGAACATATCAAGGACACAAAGTGCTCCCGTTTCTATTCCTATGGCTTTACTTGATCCATATGATAGACAACCAAATCTTGTCGGACATACTGGTCGTCTTCGTACCGCGAGGAAAACTTCCATTAGCCAAATGAGTGGTCCACTATATGCTACTCCTACTACTACTGGAAACGAGTCTGAGAATTCTCTTCATGGTGATGCCAAAGGTTTTGGAAAAAATCTGTATTCTTTCTGCTCTTCATGTATTCCAGGAGTTATGAACCCACACGCGAGAATTATACAACAATGGAACAAGTTGTTGGACATATTTTGCTTGGTCGCAATTCTTGTTGATCCTTTATTTTTGTTCTTATTCTATGTGAACAAAGATAAATGTATTGTTATCAATTGGAGAATGGCAACAACACTTGTTGTAATTAGAAGCATAATTGATATCATGTGTTTCTTGAACATTCTTATCCAATTTAGGTTGGCTTATACTTCTCCTTTGTTTAATGTGGTTGGTGCTGGAGAGTTAGTTGACAATCCTAAGAAAATTGCTCTTAATTACCTTAAGAATTACTTTTTCTTCGACTTACTTGCTGCATCACCTCTTCCTCAGATTATCCTAGCAAATTCCTTGGGGTCTTCAGGTGCAAATTATGCGAAGAATCTTCTACTTATAGTGATCTTTGCACAGTTTGTTCCGAGATTATTCAAATTTTTGCCTCGGCTATTTGGCAAGTCTCCAATCCGAATCATATTTGTGTCAGCCTGGGCAAATTTAATTATAGCTCTTCTTATTTTTCATGTTGTTGGTTCATGCTGGTACGTCTTTGGTCTACAGAGGGTTAACCAATGTTTACGAGATGCCTGCCATCATTCTAATCTACTAGGATGCTCGTACTTGATTGATTGTGATTCTAAAGCGGGGAATATATCAGCCACACTATGGAGTAAAGATAAGGGTGCTGATGCTTGTTTAAACGCCACATCTGGTGCTTTTTCTTATGGAATCTATGCAAATGCTATACCACTTACTATAGAAACTAAGGTGATCAACAAATATGTGTATGCACTCTTTTGGGGATTCCAGCAAGTCATGACTCTGGCTGGTAATCAAACTCCAAGCTATTTTGTGTGGGAAGTCCTCTTTACAATGTCCATCATAGCATTGGGACTCTTGCTTCTAGTGCTTCTCATCGGAAACATGCAGAGCTTTATTCAGTCTCTAGGCAAGAGGAGCCTAGAAATGATACGTAGAGGCCGTGATGTTGAGCAATGGATGAGCCACCATCGCGTACCAGACGATCTCAGAAGGAGAGTACTACTGGCTGAATGGGATAGTTGGCATAATGTTCCTGAGAGAACGGTTCTCGAGAATTTGCCAAAAAATCTCCAGATAGATCTACGACGTCATATCTTCAGATTTGTTAAAAAAGTTCGAATTTTTTCCCTGTTGGATGAGGATGCGCCTATCTTAGATGTCATTCGTGAGCGACTAATACGTGCGATGTACATGAGAGGAGATAAAATTTTGAGTCAGGGTGATCTTGTACATAAAATGATGTTTGTTGTGCGTGGAAAATTGGAGAGCATCAGAGCAGATGGAATTCAAGTTTCTCTATCTGAAGGGGATGTTTGTGGTGAAGAGCTTCTAATACGGTTTCTTGAGCAGTCTTCTGAAAGAAAAGAAGGTAAAAAAGTAAAGATTCAAGGACAGGACTTAATTAGTGACAGAACAGTAAATTGCTTAACCAATGTGGAGGCATTTTCACTCGAAGCTAAAGACATTGAAGAAGTCACAACTCTTTTTTCAAAACTCTTGCGGAGCCCTCATGTTCAACAAGTCATAAGGTATGAATCACCTTATTGGAGATCCCTTGCAGCAACGAGAATTCAGGTTGCATGGAGATACAGGAAGAAGCGTCTAAGGCCAGCAAATACCACACAAAATGATTATCAAACATTGAGGTATGAATCGCCTTATGGGAAATCACATAGAGTAAGCAGAATTCAGGTTGCATGGACAAACAGGAAGAAGCATCTAAGACGAGCTAATACCACACAATAA 2142 0.3922 MNHFEKDEITNLSETHPQRSDESENSNFQRNISRTQSAPVSIPMALLDPYDRQPNLVGHTGRLRTARKTSISQMSGPLYATPTTTGNESENSLHGDAKGFGKNLYSFCSSCIPGVMNPHARIIQQWNKLLDIFCLVAILVDPLFLFLFYVNKDKCIVINWRMATTLVVIRSIIDIMCFLNILIQFRLAYTSPLFNVVGAGELVDNPKKIALNYLKNYFFFDLLAASPLPQIILANSLGSSGANYAKNLLLIVIFAQFVPRLFKFLPRLFGKSPIRIIFVSAWANLIIALLIFHVVGSCWYVFGLQRVNQCLRDACHHSNLLGCSYLIDCDSKAGNISATLWSKDKGADACLNATSGAFSYGIYANAIPLTIETKVINKYVYALFWGFQQVMTLAGNQTPSYFVWEVLFTMSIIALGLLLLVLLIGNMQSFIQSLGKRSLEMIRRGRDVEQWMSHHRVPDDLRRRVLLAEWDSWHNVPERTVLENLPKNLQIDLRRHIFRFVKKVRIFSLLDEDAPILDVIRERLIRAMYMRGDKILSQGDLVHKMMFVVRGKLESIRADGIQVSLSEGDVCGEELLIRFLEQSSERKEGKKVKIQGQDLISDRTVNCLTNVEAFSLEAKDIEEVTTLFSKLLRSPHVQQVIRYESPYWRSLAATRIQVAWRYRKKRLRPANTTQNDYQTLRYESPYGKSHRVSRIQVAWTNRKKHLRRANTTQ* 714
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1940 713 MobiDBLite consensus disorder prediction 1 35 - -
Mtr6g1940 713 SUPERFAMILY Voltage-gated potassium channels 118 437 - -
Mtr6g1940 713 Gene3D Jelly Rolls 504 630 IPR014710 -
Mtr6g1940 713 MobiDBLite consensus disorder prediction 74 92 - -
Mtr6g1940 713 Gene3D - 126 434 - -
Mtr6g1940 713 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 677 712 - -
Mtr6g1940 713 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 93 - -
Mtr6g1940 713 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 104 673 - -
Mtr6g1940 713 CDD CAP_ED 506 624 IPR000595 -
Mtr6g1940 713 MobiDBLite consensus disorder prediction 1 23 - -
Mtr6g1940 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 93 - -
Mtr6g1940 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 677 712 - -
Mtr6g1940 713 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 104 673 - -
Mtr6g1940 713 Pfam Ion transport protein 128 437 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr6g1940 713 Gene3D Helix hairpin bin 442 498 - -
Mtr6g1940 713 ProSiteProfiles cAMP/cGMP binding motif profile. 516 586 IPR000595 -
Mtr6g1940 713 MobiDBLite consensus disorder prediction 74 93 - -
Mtr6g1940 713 SUPERFAMILY cAMP-binding domain-like 436 627 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1940 Mtr-Chr6 35411526 35430577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1940 2 81 Ion Channels AT3G17700 35.000 7.51e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1940 K05391 - ccaj:109789004 762.681