Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1939 ATGGCTGAGTTTGATAACGATGAGTTGCCAATCCTGTCAGATGCTAATCCAAAACAATCAAATGAACCTGATAGTTCTAAATTCCGGAATCTTGTACCTAGGACGCGAAGTGTATCGATTTCTATTCCCATGATTCCTATGGAACCATATGAAAGGGATACTAATTTCAAGGGACACACAGGTCCTCTAAGGAGTCAAAGAAAAGCTTCATTTAATCCAATGAGTGGTCCATTATATGTTACTCATACACCTGGAAATCTTTTCGGGCAGAGTTTGGTCGTGCCAACGAGCAAAGCAGTGGAAAGTAAGACCGAAAAGTTTCCTTTATGCGGCATGAATGAACATGGTTTGCAGAATAACAATGCTGGTAAAAATGAACATTTATTAAGGTCTGGTCAATTGGGAATGTGTAATGATCCTTACTGTACTACTTGTCCAACTTACTTCAAGGCTACTCAACAAAGCGATTTGAAAAGTTCGAGTCTGTTCAATCCTAAGTTTCAGAATGTTCTCTATGGTGATGCAAAGGATTGGGCAAGAAGAATGTTTGCTTTCTTGATTCCACATGTACCTAGAGTTATAAATCCACATAATAAACTTGTACATCAATGGAATAAATTTTTTGCAATTTGTTGCTTGGTGGCAATTTTTGTGGATCCATTATTTTTCTTCTTGCTATCTGTGGATTATGACCATAAATGTATTGTTCTTAACTCAACAATGACAACAGTGCTTGTTTTTCTTAGAAGTGTGAATGATTTCATACATTTCCTAAATATTATTCTTCAGTTTAGGTTGGCTTATGTGGCCCCTGAGTCTAGAGTGGTTGGTGCTGGAGAATTAGTTGACCATCCTAAGAAAATAGCTCTTCACTATCTTCAGACATATTTTCTTTTTGACTTGTTTGTTGTGCTTCCACTTCCTCAGATAATGATATTGTTTGTCATTCCAAAACACTTGGGAACATCAGGAGAAAATTATGCAAAGAATCTTTTGCGCGCCGTCGTCCTTGCTCAATACATTCCAAGATTGTGTAGATTTCTCCCTATGCTAATTTATCCAACTGGATTCATCTTCGAGTCGGCATGGGCTAGTTTCTTTATTAATCTTTTTACCTTTATGCTGTCTGGCCATGTTGTTGGCTCATGGTGGTACCTCTTTGGTTTGCAGAGGGTTAATCAATGTCTACGAAATGCGTGCAAGCATATATATTTTGATGAATGCTCAAAACTCATTGATTGTGGTCATGGAAGCACTCAGGAATATCAAAAGGGATCAAATTGGCCTGATTGGAAGAAAAATGACAATGCAAGTGCTTGTTTCACAGAAGATGGTTTTAAGTATGGAATCTATCTTAAAGCAGTCAACCTTACTACAAAATCTAATGTTCTTACAAGATATGTATATTCATCATTTTGGGGATTTCAGCAAATTAGTACTCTGGCGGGAAATTTGACACCAAGCTATTTTATTTGGGAAGTCCTTTTTACGATGGGAATCATTGGATTAGGACTCTTGCTTTTCGCTCTTCTCATTGGAAACATACAAAACTTTCTTCAGGCTCTTGGAAAAAGGAGGCTAGAAATGTCACTTAGACAACGCGATGTTGAGCAATGGATGAGCCATAGGCGCTTAGCAGATGATCTGAGAAGGAGAGTGCGACAAGCTGAACGTTACAACTGGGCTGCAACGAGAGGAGTGAATGAAGAAATACTCATGGAGAATTTGCCAGAAGATCTTCAGAGGGATATTAGACGACATCTCTTTAGATTTGTTAAGAAGGTTCGAATATTTTCCTTGATGGATGATCCTATTCTGGACGCCATTTGCGAGAGACTAAGACAAAAAATTTACATCAAAGGAAGCAAAATTTTGTATGATGGTGGCTTAGTAGAGAAGGTCGTTTTTATCGTGCGTGGAAAATTAGAGAGTATTGGTGAAGATGGAATTCGAGTTCCTCTATCTGAAGGCAATGTTTGTGGTGAAGAACTTCTTACATGGTGTCTTGAGCATACTTCAGGAAACAAAGTTTGTGCTAAAACAAGAATTCCAAGACAAAGGCTAGTTAGCAATAGGACAGTATTGTGCCTAACAAATGTGGAGGCATTTTCCCTTAGAGCAGCAGACCTTGAAGAAGTTACAAGCCTTTTTGCAAGATTTCTGAGGAGTCCTGGTGTTCAAGGTGCCATAAGGTATGAATCACCTTACTGGAGATGTCTCGCCGCTACGCGAATCCAGGTTGCGTGGAGATACAGAAAGAAACGTCTTTGTCGCGCTGACACTTCACAATCAAATAATCAAACATAA 2307 0.3871 MAEFDNDELPILSDANPKQSNEPDSSKFRNLVPRTRSVSISIPMIPMEPYERDTNFKGHTGPLRSQRKASFNPMSGPLYVTHTPGNLFGQSLVVPTSKAVESKTEKFPLCGMNEHGLQNNNAGKNEHLLRSGQLGMCNDPYCTTCPTYFKATQQSDLKSSSLFNPKFQNVLYGDAKDWARRMFAFLIPHVPRVINPHNKLVHQWNKFFAICCLVAIFVDPLFFFLLSVDYDHKCIVLNSTMTTVLVFLRSVNDFIHFLNIILQFRLAYVAPESRVVGAGELVDHPKKIALHYLQTYFLFDLFVVLPLPQIMILFVIPKHLGTSGENYAKNLLRAVVLAQYIPRLCRFLPMLIYPTGFIFESAWASFFINLFTFMLSGHVVGSWWYLFGLQRVNQCLRNACKHIYFDECSKLIDCGHGSTQEYQKGSNWPDWKKNDNASACFTEDGFKYGIYLKAVNLTTKSNVLTRYVYSSFWGFQQISTLAGNLTPSYFIWEVLFTMGIIGLGLLLFALLIGNIQNFLQALGKRRLEMSLRQRDVEQWMSHRRLADDLRRRVRQAERYNWAATRGVNEEILMENLPEDLQRDIRRHLFRFVKKVRIFSLMDDPILDAICERLRQKIYIKGSKILYDGGLVEKVVFIVRGKLESIGEDGIRVPLSEGNVCGEELLTWCLEHTSGNKVCAKTRIPRQRLVSNRTVLCLTNVEAFSLRAADLEEVTSLFARFLRSPGVQGAIRYESPYWRCLAATRIQVAWRYRKKRLCRADTSQSNNQT* 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1939 768 Pfam Ion transport protein 204 525 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Mtr6g1939 768 SUPERFAMILY cAMP-binding domain-like 524 717 IPR018490 -
Mtr6g1939 768 Gene3D Jelly Rolls 595 719 IPR014710 -
Mtr6g1939 768 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 760 - -
Mtr6g1939 768 PANTHER CYCLIC NUCLEOTIDE-GATED CATION CHANNEL PROTEIN 26 760 - -
Mtr6g1939 768 CDD CAP_ED 597 713 IPR000595 -
Mtr6g1939 768 ProSiteProfiles cAMP/cGMP binding motif profile. 597 665 IPR000595 -
Mtr6g1939 768 MobiDBLite consensus disorder prediction 13 29 - -
Mtr6g1939 768 Gene3D Helix hairpin bin 524 589 - -
Mtr6g1939 768 SUPERFAMILY Voltage-gated potassium channels 196 525 - -
Mtr6g1939 768 MobiDBLite consensus disorder prediction 1 29 - -
Mtr6g1939 768 Gene3D - 206 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1939 Mtr-Chr6 35397373 35406147 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1939 5 675 Ion Channels AT3G17700 62.297 0.0 811
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1939 K05391 - gmx:100795955 1207.97