Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1932 ATGTGTAGTAGAGGCCATTGGAGACCATCTGAGGATGAGAAGCTTAGGGAGTTGGTGGAAAGCTATGGACCTCATAATTGGAACGCCATAGCTGAAAATCTCCGAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAATTGGACCCAAGAATAAACAGAAATCCTTTCACGGAGGAAGAAGAAGAGCGTCTTATAACTTCTCATCGGATTCATGGTAATAGATGGGCGGTAATTGCAAGACACTTCCCCGGACGGACTGATAACGCTGTAAAGAATCATTGGCATGTGATGATGGCGAGGATTCGTCGAGAAAGGTATAAGATCTATGCAAAAGGTCCTCTTGATCATCACACAATTTTCTCTTCAAATGATCATCAAACAAACTTTGAGAGAACAAATCTCCACTCCTTTGTTGAGAAGTATCATGAAAAGCATAATCACCCTCGTGTCTCTCATAGCTCTTTCCAATTTCCTAAGTTTCACTTTCATGGTCCAAATTCTTGTTCCACAATGCTTCAAGATAAAAAAAGTCAATCAATTGAGTTCTATGATTTTCTTCAAGTAGATTCCAATAAAAGTGAAGTAACTGATAATGCTAGAAGAGATGATGAGGAAGTCAATCAAGATGTTATGGAACTGAAGAACAAGGAAAACAATGTTCAATTCATTGATTTTTTGTCTACCGGAAGTTGCAAACATAGTTGCAAAATCAAGTGA 726 0.3871 MCSRGHWRPSEDEKLRELVESYGPHNWNAIAENLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLITSHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERYKIYAKGPLDHHTIFSSNDHQTNFERTNLHSFVEKYHEKHNHPRVSHSSFQFPKFHFHGPNSCSTMLQDKKSQSIEFYDFLQVDSNKSEVTDNARRDDEEVNQDVMELKNKENNVQFIDFLSTGSCKHSCKIK* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1932 241 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Mtr6g1932 241 Gene3D - 4 55 - -
Mtr6g1932 241 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Mtr6g1932 241 Coils Coil 199 219 - -
Mtr6g1932 241 PANTHER MYB PROTEIN-RELATED 1 233 - -
Mtr6g1932 241 SMART sant 55 103 IPR001005 -
Mtr6g1932 241 SMART sant 3 52 IPR001005 -
Mtr6g1932 241 Pfam Myb-like DNA-binding domain 4 50 IPR001005 -
Mtr6g1932 241 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Mtr6g1932 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Mtr6g1932 241 CDD SANT 7 48 IPR001005 -
Mtr6g1932 241 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Mtr6g1932 241 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Mtr6g1932 241 CDD SANT 58 101 IPR001005 -
Mtr6g1932 241 PANTHER MYB-RELATED PROTEIN A-LIKE 1 233 - -
Mtr6g1932 241 Gene3D - 57 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1932 Mtr-Chr6 35309109 35312901 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1932 1 233 MYB Transcription Factor Family AT1G17950 55.556 4.20e-82 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr6g1932 Myb_DNA-bind_6 6.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1932 K09422 - gmx:100811746 348.591