Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1920 ATGGCTATGCAATCACCTTCCTCTTCCACTTCAATTTCCTATGATTACAAATACCAAGTATTCCTCAGTTTCAGAGGAAGTGACACTCGGTACGGTTTCACCGGCAATCTCTACAAGGCTCTTACTGACAAGGGAATCAACACCTTCATTGATGACAATGGTCTTCAAAGAGGAAATGAAATCACACCATCACTTCTCAAGGCCATTGAAGAGTCTAGGATTTTTATTCCTGTGTTTTCTATCAACTATGCCTCTTCTTCGTTTTGTTTGGACGAACTTGACCACATCATTCATTGCTACAAGACAAAGGGTCGCCCTGTTTTGCCTGTTTTCTTTGGTGTGGATCCTTCTCATGTGCGACATCATAAAGGTAGTTATGGTGAAGCATTGGCTGAGCATGAAAAGAGGTTTCAAAATGATCCGAAAAACATGGAGAGGTTGCAGGGATGGAAAGACGCTCTGAGCCAGGCTGCTAACTTGTCCGGCTACCATGATAGTCCTCCTGGATATGAATACAAGCTTATTGGAAAGATAGTCAAATACATCTCCAACAAGATCAGTCGACAGCCCTTAAATGTTGCCACTTACCCTGTTGGATTGCAGTCTCGAGTACAACAAGTGAAATCGCTTCTTGATGAAGGATCTGATCATGGGGTCCATATGGTTGGAATTTATGGGATTGGAGGCTTGGGAAAATCAACACTTGCGAAAGCAATTTATAACTTTATTGCTGATCAATTTGAATGCTCATGTTTTCTTGAAAATGTGAAAGAGAGTTCAGCTTCAAATAACTTGAAAAATCTCCAGCAGGAGCTCCTTTTAAAAACACTTCAACTTGAAATTAAGTTAGGAAGTGTTAGCGAAGGAATTCCTAAAATAAAGGAAAGGCTACATGGAAAGAAGATTCTTTTGATTCTTGATGATGTTGACAAACTGGATCAGCTAGATGCTTTGGCTGGAGGACTTGATTGGTTCGGTCCTGGAAGCAGAGTCATCATCACCACCCGAGATAAACACTTACTAGACTGTCATGGGATAGAAAAAACATATGCAGTAGAAGAGTTGAATGGGACAGAAGCTCTTGAATTGTTGAGGTGGAAGGCTTTTAAAAATGAGAAAGTTCCTTCAAGTTATGAAGACATTTTAAAGCGTGCAGTTGTATATGCTTCTGGCCTTCCATTAGCGATAGAAGTAGTGGGTTCTAACTTGTTTGGAAAGAGTATTGCAGAATGTGAGTCTACATTAGATAAGTATGGAAGAATTCCACATAAAGATATCCAAAAGATACTTAGACTCAGCTATGATGCTTTGGAAGAAGAGGAGCAGAGTGTCTTTTTGGATATTGCTTGTTGCATCAAAGGATGTAGATTGGAGAAAGTCAAACAGATACTTCATGCTCATTATGGTTATTCCATAGAAAGCCACATTGGAGTGTTGGTTGATAAGTCTCTCATAAATATTAGTTGGTGCTGTTTCAGTGGTATCAAAGTGACATTACATGAATTGATAGAGGTCATGGGTAAAGAAGTCGTCCGACAAGAATCACCTAAAGAGCCTGGAGAAAGAAGCAGGTTATGGTCTCAAGATGATATAGTTCATGTTTTAAAAGAAAACACTGGAACTGGTAAAACTGAAATGATATGTATGAATTTGCACTCTATGGAATCTGTAATAGACAAGAAAGGAAAGGCCTTCAAAAAGATGACAAGATTGAAAACACTTATTATTGAAAATGGCCATTGTTCTAAAGGTCTCAAGTATCTTCGAAGCAGTTTGAAAGCATTGAAATGGGAAGGATGTTTATCAAAGTCTCTATCGTCTAGTATTTTAAGCAAGAAGTTCCAGGATATGACAATCTTGATATTGGACCATTGTGAATATTTAACACATATACCCGATGTCTCAGGGCTTTCAAATTTAGAAAAGTTATCATTTGAATATTGTAAGAATTTAATTACAATTCACAATTCGATTGGACACCTAAATAAACTTGAAAGGTTAAGTGCATTTGGTTGCAGGACGCTCAAACGTTTTCCACCTTTAGGGTTGGCATCTCTTAAAGAATTGAAGCTTTCTTGTTGTTATAGTCTCAAAAGTTTTCCAAAATTATTATGCAAGATGACAAATATAGACAAGATTTGGTTTTGGTATACTTCCATACGAGAATTGCCATCTTCATTTCAAAATCTCAGTGAACTTGATGAGTTATCAGTACGGGAATTTGGAATGCTGAGGTTCCCAAAACATAATGATAGAATGTATTCTATAGTGTCACCATCTTAG 2283 0.378 MAMQSPSSSTSISYDYKYQVFLSFRGSDTRYGFTGNLYKALTDKGINTFIDDNGLQRGNEITPSLLKAIEESRIFIPVFSINYASSSFCLDELDHIIHCYKTKGRPVLPVFFGVDPSHVRHHKGSYGEALAEHEKRFQNDPKNMERLQGWKDALSQAANLSGYHDSPPGYEYKLIGKIVKYISNKISRQPLNVATYPVGLQSRVQQVKSLLDEGSDHGVHMVGIYGIGGLGKSTLAKAIYNFIADQFECSCFLENVKESSASNNLKNLQQELLLKTLQLEIKLGSVSEGIPKIKERLHGKKILLILDDVDKLDQLDALAGGLDWFGPGSRVIITTRDKHLLDCHGIEKTYAVEELNGTEALELLRWKAFKNEKVPSSYEDILKRAVVYASGLPLAIEVVGSNLFGKSIAECESTLDKYGRIPHKDIQKILRLSYDALEEEEQSVFLDIACCIKGCRLEKVKQILHAHYGYSIESHIGVLVDKSLINISWCCFSGIKVTLHELIEVMGKEVVRQESPKEPGERSRLWSQDDIVHVLKENTGTGKTEMICMNLHSMESVIDKKGKAFKKMTRLKTLIIENGHCSKGLKYLRSSLKALKWEGCLSKSLSSSILSKKFQDMTILILDHCEYLTHIPDVSGLSNLEKLSFEYCKNLITIHNSIGHLNKLERLSAFGCRTLKRFPPLGLASLKELKLSCCYSLKSFPKLLCKMTNIDKIWFWYTSIRELPSSFQNLSELDELSVREFGMLRFPKHNDRMYSIVSPS* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1920 760 Gene3D - 14 183 IPR035897 -
Mtr6g1920 760 ProSiteProfiles TIR domain profile. 16 186 IPR000157 GO:0007165
Mtr6g1920 760 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 739 IPR044974 GO:0006952
Mtr6g1920 760 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 163 IPR035897 -
Mtr6g1920 760 PRINTS Disease resistance protein signature 221 236 - -
Mtr6g1920 760 PRINTS Disease resistance protein signature 296 310 - -
Mtr6g1920 760 PRINTS Disease resistance protein signature 389 403 - -
Mtr6g1920 760 PRINTS Disease resistance protein signature 681 697 - -
Mtr6g1920 760 CDD AAA 198 337 - -
Mtr6g1920 760 Gene3D - 184 348 IPR027417 -
Mtr6g1920 760 Gene3D Ribonuclease Inhibitor 682 749 IPR032675 -
Mtr6g1920 760 Gene3D Ribonuclease Inhibitor 535 681 IPR032675 -
Mtr6g1920 760 PANTHER ARCHAEAL ATPASE 27 739 - -
Mtr6g1920 760 SUPERFAMILY L domain-like 553 734 - -
Mtr6g1920 760 Pfam NB-ARC domain 202 415 IPR002182 GO:0043531
Mtr6g1920 760 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 448 IPR027417 -
Mtr6g1920 760 Gene3D - 354 438 IPR042197 -
Mtr6g1920 760 SMART till_3 17 160 IPR000157 GO:0007165
Mtr6g1920 760 Pfam TIR domain 17 186 IPR000157 GO:0007165
Mtr6g1920 760 SUPERFAMILY "Winged helix" DNA-binding domain 425 536 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1920 Mtr-Chr6 35104616 35110509 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1920 6 738 WRKY Transcription Factor Family AT4G12020 29.156 8.57e-66 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1920 - - mtr:MTR_6g074855 1115.52