Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1907 ATGTTAGCTAATAGCTTATCTCCATCTTCACTTCCATCTTCTGAGCCTTTTTCTTGCAATGAAAATGGCACTTCTTCCACTAATAAAAGGAAAAGAAGACCCGCCGGAACACCAGATCCAGATGCAGAAGTGGTGTCTCTCTCACCAAAAACATTGTTGGAATCAGATCGTTATGTATGTGAGATCTGCAACCAAGGATTCCAAAGGGACCAAAATTTACAGATGCATAGAAGAAGACATAAGGTACCATGGAAGCTATTGAAGAGAGAAACACCAGTTGTTAGAAAAAGAGTTTTTGTTTGTCCTGAACCAACTTGTTTGCACCATGATCCTTGTCATGCTTTAGGTGATCTTGTTGGTATCAAAAAACATTTTAGAAGAAAACATAGTAATCATAAACAATGGGTTTGTGAAAGATGTTCCAAAGGTTATGCAGTGCAATCTGATTATAAAGCTCATCTCAAAACTTGTGGTACTAGAGGTCATTCATGTGATTGTGGTCGTGTTTTCTCAAGGGTTGAGAGTTTTATTGAGCATCAAGATGCTTGTAACATGGGAAGGATCCATAATTCAGAAGCTCAACCACTACAAACACCAACTGCATGCTTATCAAGAACAGCTTCAAGTCCAAGTCCATCAAGTGAAACAAATTTCAATACATGTCCATGGCAAACAAGGCTTCAAGCAATTCCAAAAACAACAAAAGAATCAACAATATTCATGAACCCTGTTACTCCTATTTCTACTATTACACCTTCTTCTCAAACTTTCTCCAAGAACAATAAACTTCTACTCCATCCAAACTTGGAACTTCAACTCTCCACTACAAACAACACCAACATGTCTCTAACAACAGACACGCCTTCGATCAGAAGTGTTGGTACTGTAGAGGCTATTCAGAAGGTTAACCGGTCAACTCAGTTGCATCTCTCAATAGGGTCCTCGGAAATGAGTCATGAGAAAAATGAATCAAACAATATTAGAAACTCAAACTCATCACCAAAGGAGAGTAGCAATAGCAATGAGAAAGTTCAATCAACAACAACAAACAACATGGGTTTGTTGAGGGTTCAAGAACAAGCAAAGGAACAATTAAGGGTAGCTATGGCTGAAAAAGCTTATGCTGAAGAAGCAAGGAAACAAGCAAAGAAACAAATTGAAATGGCTGAACAAGAGTTCAACAATGCAAAGAGAATTAGACAACAAGCACAAAGTGAACTTGATAAAGCTTATGGATTGAAACAACATGCAATAAAGCAAATCAATTCAACTATGCTTCAAATCACTTGTCAAACTTGCAAACAACAATTTCAACATGAAGATAACTCTTTGGTGTTGAGCTATGTTTCTTCTGCCATAACTACTGAAGGTGGTGAAGTAGAAAATGTTGATGGAAAAGGCAAAACAACTAATTAG 1416 0.3743 MLANSLSPSSLPSSEPFSCNENGTSSTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRIHNSEAQPLQTPTACLSRTASSPSPSSETNFNTCPWQTRLQAIPKTTKESTIFMNPVTPISTITPSSQTFSKNNKLLLHPNLELQLSTTNNTNMSLTTDTPSIRSVGTVEAIQKVNRSTQLHLSIGSSEMSHEKNESNNIRNSNSSPKESSNSNEKVQSTTTNNMGLLRVQEQAKEQLRVAMAEKAYAEEARKQAKKQIEMAEQEFNNAKRIRQQAQSELDKAYGLKQHAIKQINSTMLQITCQTCKQQFQHEDNSLVLSYVSSAITTEGGEVENVDGKGKTTN* 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1907 471 Coils Coil 358 406 - -
Mtr6g1907 471 MobiDBLite consensus disorder prediction 1 25 - -
Mtr6g1907 471 Gene3D Classic Zinc Finger 36 98 - -
Mtr6g1907 471 PANTHER OS03G0310200 PROTEIN 1 457 IPR039288 GO:0009630
Mtr6g1907 471 MobiDBLite consensus disorder prediction 312 352 - -
Mtr6g1907 471 SMART c2h2final6 58 80 IPR013087 -
Mtr6g1907 471 SMART c2h2final6 135 162 IPR013087 -
Mtr6g1907 471 SMART c2h2final6 99 129 IPR013087 -
Mtr6g1907 471 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Mtr6g1907 471 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Mtr6g1907 471 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Mtr6g1907 471 PANTHER PROTEIN INDETERMINATE-DOMAIN 16-LIKE 1 457 - -
Mtr6g1907 471 MobiDBLite consensus disorder prediction 1 45 - -
Mtr6g1907 471 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1907 Mtr-Chr6 34646084 34649555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1907 21 218 C2H2 Transcription Factor Family AT2G01940 79.904 5.96e-118 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr6g1907 zf-C2H2 0.0045 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1907 K25871 - gmx:100785333 660.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1907 6 34646084 34649555 Mtr6g1907 6 34646084 34649555 ECH