Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1900 ATGGCTATGCAATCACCTTGCTCTTCCTCTTCCATTTCCTATGGATTCAAATACCAGGTATTCCTCAGTTTCAGAGGAAGTGACACTCGGTATGGTTTTACCGGTAATCTCTACAAGGCTCTTACTGACAAGGGAATTCACACCTTCATGGATGATCGTGAACTTCAAAGAGGGGATGAAATCAAAAGATCACTCGACAATGCCATTGAAGAGTCTAGAATTTTCATTCCTGTGTTTTCTGCCAACTATGCCTCTTCGTCATTTTGTTTGGATGAACTTGTCCAAATCATTAACTGCAAGGAAAAGGGTCGCGTCGTTTTGCCTGTTTTCTATGGCATGGATCCTACTAATGTGCGACATCATAGAGGTATTTATGGTGAAGCATTGGCTAAGCATGAAAAAAGGTTTCAAAATGATATGGATAACATGGAGAGGTTGCAGAGATGGAAAGTTGCTCTGAACCAAGCTGCTAACTTGTCAGGCTACCATTTTAGTCCTGGATATGAATATGAGTTTATTGGGAAGATAGTCAGAGACATCTTGGACAAGACCGAACGTGTTTTGCACGTAGCCAAATACCCTGTTGGATTAAAGTCCCGAGTAGAACAAGTGAAATTGCTTCTTGATATGGAATCTGATGAAGGGGTACACATGGTAGGACTTTATGGTACTGGAGGCATGGGGAAATCAACACTTGCAAAAGCAATTTATAATTTTGTTGCCGATCAATTTGAAGGTGTATGTTTTCTTCATAAAGTTAGAGAGAATTCAACTCATAATAGCTTGAAACATCTCCAGAAGGAGCTTCTTTTAAAAACAGTTAAATTGAACATTAAGTTAGGAGATGCTAGTGAGGGAATTCCACTTATAAAGGAAAGACTAAATAGAATGAAGATTCTTTTGATTCTCGATGATGTTGACAAACTGGAACAGCTAGAGGCATTAGCTGGAGGACTTGATTGGTTTGGTCATGGAAGTAGAGTCATCATTACCACTCGAGATAAACACTTACTAACATGCCATGGGATAGAAAGAACATATGCGGTAAACGGGCTACATGAGACAGAAGCTTTTGAATTGTTGAGGTGGATGGCTTTTAAAAATGGTGAAGTTCCTTCGAGTTATAACGATGTTTTAAACCGTGCAGTTGCATATGCTTCCGGCCTTCCGTTAGTTCTCGAAATAGTGGGTTCTAACTTGTTTGGAAAGAGCATGGAAGAATGGCAATGCACATTAGATGGGTATGAAAAGATTCCCAATAAAGAGATCCAAAGGATACTTAAAGTAAGCTATGATGCTTTGGAAGAAGAGCAGCAAAGTGTCTTTCTAGATATTGCTTGTTGTTTCAAAGGGGGTAGCTGGATAGAATTCGAAGATATACTTAAATATCATTATGGCCGATGCATAAAACATCATGTTGGAGTGTTGGCTGAAAAATCTCTCATATACCAATATGGTCTTAGTGTGAGATTACATGACTTGATAGAGGACATGGGCAAAGAAATCGTCCGACAAGAATCTCCTAAAGAGCCGGGTGAACGAAGTAGGTTATGGTGTCATGATGATATAATCCACGTTTTAGAAGAAAACACTGGAACTAGTAAAATTGAAATGGTATATCTGCATTGTCCTTCAACGGAACCCGTAATAGACTGGAATGGAAAGGCCTTCAAGAAGATGAAAAAACTCAAAACACTTGTCATTGAAAATGGCCATTTTTCTAAAGGTCCCAAATACCTTTCAAGTTGTTTGAGAGTATTAAAATGGAAAGGATATCCTTCCAAGTCTCTATCATCTTGTTTTTTGAACAAGAAGTTCGAGAATATGAAAGTCTTGATATTGGACTATTGTGAATATTTAACCTGTATACCCAATGTCTCCGATCTTCCAAATTTAGAAAAGTTGTTGTTTATAAATTGTCATAATTTAATTACAATTCACAACTCGATTGGGTACCTAAATAAACTTGAAACCCTAATTGCAAAGTATTGCAGCAAGCTCGAGAGTTTTCCACCCTTACAATTGGCATCTCTTAAGATATTGGAACTCTATGAGTGTTTCAGACTCAAGAGTTTTCCAGAATTATTATGCAAGATGATAAATATAAAAGAGATCCGGTTGTCTGAAACTTCCATAAGAGAATTGTCATTTTCATTTCAAAATCTCAGTGAACTTCGTGACCTAATAATATGCCAAGATGAAATGCTCAGGTTTTCAACTCAGATGGAATTGTCAAAATTGACAAAGATTACTGCTTCATATTGCCGTTTATTATTGCCTAATCATAATGATACGTTCAGTTCCACAATGTTTTCAAATGTGGAACATCTAAATCTCAAATATAACAACTTCTCAGATGAATGTCTCCCACTACTTCTCAAGTGGTGTGTTAATGTGAGATATCTAGACATATGGGGAAGCAATTTAAAAGTTCTTCCCGAATGCCTTAACGAATGTCACCTTCTTAGGGCCATCAATTTGAGTCGTTGTGACTATCTTGAGGAAATTAGAGGGATTCCACCAAATATAGAAAGGCTTTCTGCAAGGCAATGCGAATCATTGAATCCATCAAGTAGAAGAATGTTATTTAGACAGAAACTACATGAGGCTGGATGCACCTATATTCTTCTCCCAAACGGAACAGAGGGGATTCCAGACTGGTTCCAACACCAAATCACGGGACAAACAATTTCTTTCTGGTTTCGTAAAAAGATCCCTTTTATACGTTCTATTGTTCTTCTTGGATTTTGTAATGATGTGATTAACGTAAGAGTCAATTTGTTTGTCAATGGCTGTGAATATTGTTTGATGCGTTGTTGCCCTTTCCGCTTTGAACCGAATCATACATGTCTATTTGATTTGAGATTGGAAGAAAATATTAGACTATATAGCCAAGATTATCCCGGGAAACTCGTTTGTGAACTGGAGGAAGTACTGTTAGAAAATGAATGGATTTATGTGGAGCTTAAGTTGTTAGGGAGGTCATTGAATCCAAGCGAGGATGAGATTAGAACATTAAGTCGTGCACAAATGGGAATCCACGTGTTGAAGGAGAAAAACAGCATAGAGGAGGATGTGATATTCACCAATCCTTATATGAAAAAGAGAAAGCTAGATGAATATTTGAGGACGTGA 3135 0.3764 MAMQSPCSSSSISYGFKYQVFLSFRGSDTRYGFTGNLYKALTDKGIHTFMDDRELQRGDEIKRSLDNAIEESRIFIPVFSANYASSSFCLDELVQIINCKEKGRVVLPVFYGMDPTNVRHHRGIYGEALAKHEKRFQNDMDNMERLQRWKVALNQAANLSGYHFSPGYEYEFIGKIVRDILDKTERVLHVAKYPVGLKSRVEQVKLLLDMESDEGVHMVGLYGTGGMGKSTLAKAIYNFVADQFEGVCFLHKVRENSTHNSLKHLQKELLLKTVKLNIKLGDASEGIPLIKERLNRMKILLILDDVDKLEQLEALAGGLDWFGHGSRVIITTRDKHLLTCHGIERTYAVNGLHETEAFELLRWMAFKNGEVPSSYNDVLNRAVAYASGLPLVLEIVGSNLFGKSMEEWQCTLDGYEKIPNKEIQRILKVSYDALEEEQQSVFLDIACCFKGGSWIEFEDILKYHYGRCIKHHVGVLAEKSLIYQYGLSVRLHDLIEDMGKEIVRQESPKEPGERSRLWCHDDIIHVLEENTGTSKIEMVYLHCPSTEPVIDWNGKAFKKMKKLKTLVIENGHFSKGPKYLSSCLRVLKWKGYPSKSLSSCFLNKKFENMKVLILDYCEYLTCIPNVSDLPNLEKLLFINCHNLITIHNSIGYLNKLETLIAKYCSKLESFPPLQLASLKILELYECFRLKSFPELLCKMINIKEIRLSETSIRELSFSFQNLSELRDLIICQDEMLRFSTQMELSKLTKITASYCRLLLPNHNDTFSSTMFSNVEHLNLKYNNFSDECLPLLLKWCVNVRYLDIWGSNLKVLPECLNECHLLRAINLSRCDYLEEIRGIPPNIERLSARQCESLNPSSRRMLFRQKLHEAGCTYILLPNGTEGIPDWFQHQITGQTISFWFRKKIPFIRSIVLLGFCNDVINVRVNLFVNGCEYCLMRCCPFRFEPNHTCLFDLRLEENIRLYSQDYPGKLVCELEEVLLENEWIYVELKLLGRSLNPSEDEIRTLSRAQMGIHVLKEKNSIEEDVIFTNPYMKKRKLDEYLRT* 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1900 1044 Pfam NB-ARC domain 199 434 IPR002182 GO:0043531
Mtr6g1900 1044 Gene3D Ribonuclease Inhibitor 698 862 IPR032675 -
Mtr6g1900 1044 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 162 IPR035897 -
Mtr6g1900 1044 CDD AAA 195 332 - -
Mtr6g1900 1044 PRINTS Disease resistance protein signature 218 233 - -
Mtr6g1900 1044 PRINTS Disease resistance protein signature 293 307 - -
Mtr6g1900 1044 PRINTS Disease resistance protein signature 386 400 - -
Mtr6g1900 1044 PRINTS Disease resistance protein signature 673 689 - -
Mtr6g1900 1044 ProSiteProfiles TIR domain profile. 16 184 IPR000157 GO:0007165
Mtr6g1900 1044 Pfam TIR domain 17 185 IPR000157 GO:0007165
Mtr6g1900 1044 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 445 IPR027417 -
Mtr6g1900 1044 SUPERFAMILY L domain-like 505 873 - -
Mtr6g1900 1044 Gene3D - 185 344 IPR027417 -
Mtr6g1900 1044 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 991 IPR044974 GO:0006952
Mtr6g1900 1044 Gene3D - 16 184 IPR035897 -
Mtr6g1900 1044 Gene3D Ribonuclease Inhibitor 549 697 IPR032675 -
Mtr6g1900 1044 Gene3D - 351 441 IPR042197 -
Mtr6g1900 1044 SUPERFAMILY "Winged helix" DNA-binding domain 421 528 IPR036390 -
Mtr6g1900 1044 PANTHER ARCHAEAL ATPASE 28 991 - -
Mtr6g1900 1044 SMART till_3 17 159 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1900 Mtr-Chr6 34357461 34373658 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1900 15 728 WRKY Transcription Factor Family AT4G12020 30.660 4.48e-68 248