Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1898 ATGGCTGTGCAATCACCTTCTTCTTCTTCCTCTTTGTCTTCCTCTTCCTGCAATAATTTCAACTATGATGTGTTCATTAGTTTCAGGGGCACCGACACTAGATTCAGTTTCACTGGTAATCTCTATAAAGCTCTTTCTGACAATGGAATCCGAACCTTCATTGATGACAAGGATCTTCAGAGTGGTGATGAGATCACACCTTCGCTCCTCAAGAACATTGAAGACTCGAGGATTTCCATTCTTGTATTCTCTGAGAACTATGCCACTTCTTCGTTTTGTTTGGACGAACTTGTCCACATCATTCATTGCTCCAAGGAAAAGGGTAGCATGGTTATTCCTGTTTTCTATGGCATAGAACCTTCTCATGTGCGACATCAGAATAGTAGTTATGGTGAAGCACTTGCTAAGCATGAAGAGGTGTTTCAAAATAACAAGGAAAGCATGGAGCGTTTGCGTAAATGGAAGAAAGCTCTTAACCATGCTGCTAACTTATCTGGCCACCATTTCAATTTTGGAAATGAATATGAACACCATTTTATTGGGAAAATAGTTAAGGATGTCTCCAACAAGATCAACCATGTTCCTTTGCATGTTGCTGATTACCTTGTTGGACTTAAATCTCGAATATCAGAAGTGAATTCACTTCTAGAATTGGAATCTAATGATGGAGTCTGGAAAATAGGAATCCTTGGAACTGGAGGAATGGGAAAAACAACACTTGCTCAAGCAGTTTATAATTCGATTGCTGATCAATTTGAATGTAAGTGTTTCCTTCACGATGTGAGAGAAAATTCACTTAAACATGGCTTAGAGTTTCTCCAAGAGCAGCTCCTCTCCAAATCAATCAGATTTGAAACTAAGTTTGGACATGTTAATGAAGGAATTCCAGTCATAAAACGAAGGCTATCTCAGAAGAAAGTTTTGTTGATTCTCAATGATGTTGACAAACTAAATCAGTTGGAGAATTTGGTCGGAGAGCCTGGTTGGCTTGGTCATGGTAGCAGAGTCATCATTACCACTCGAGACAAATGTTTGTTATCATCTCATGGAATTAAAAAAATATACGAAGCATATGGTTTAAACAAGGAACAAGCTCTTGAATTGGTAAGAACGAAGACTTTTAAATGTAACAAAACTGATGCAAGCTATGATTACATTTTAAATCGTGCAGTTAAATATGCTTCTGGCCTTCCATTAGCTTTAGAAGTAGTGGGTTCCAACTTGTTTGGAAAGAGTATAGAAGAATGCGAGTCTACATTAGATAAGTATGAAAGAATTCCACATGCAGATATTCAAAAGATACTTAGAATAAGCTATGACTCTTTGGATGAAGAACAACAGAGTGTCTTTTTGGATATTGCTTGTTTCTTTAAATGGCATGAAAAAGAGTATACCCAAGAGTTACTTCATGGTCATTATGGTTATTGCATAAAAAGCCACATTGGAGTGTTGGTTGATAAATCTCTCATAAAATTTAATAGTGACCCTAATGTGTCTGAATTCTTAGCAGTGACATTACATGACTTGATAGAGGACATGGGTAAAGAAATCGTCCGACAAGAATCAATTAAAGAGCCTGGAAGGCGCAGTAGGTTGTGGTGTTGTGATGATATTGTTCATGTTTTACAAGAAAACACAGGAAGTAGTAAAATTGAAATGATAATTCTGAAATATCGTCCCTCAACGGAACCTGTAATAGACATGAATGAAAAGGCCTTCAAGAAGATGACAAATCTCAAAACACTTATCGTTGAAGATGACAATTTTTCTAAAGGTCCCAAGTATCTTCCGAGTAGTTTGAGAGTATTGGAATGGAGTGGATTTACTTCGGAGTCTCTATCATGTTTTTCGAACAAGAAGTTCAACAACATTAAAAACTTGACATTGGACGGTTCTAAATATTTAACCCATATATCTGATGTCTCTGGACTTCCAAATTTAGAAAAGCTCTCATTTCATTGTTGTCATAGTTTAATTACAATTCACAATTCAATTGGGTACCTGATTAAACTTGAAATCTTAGATGCATGGGGTTGCAACAAGCTTGAGAGTTTTCCACCCTTACAATTGCCCTCTCTTAAGGAATTGATATTATCTAGGTGTTCGAGTCTCAAGAATTTTCCAGAATTATTATGCAAGATGACAAATATAGAAGAGATTGAGTTACATCGTACTTCCATAGGAGAATTGCCATCTTCATTTAAAAATCTCAGTGAACTTCGTCACTTAAGCATATCATTTGTCAATTTAAAAATTCTTCCCGAGTGCCTTAGTGAATGTCACCGTCTTAGGGAGCTTGTATTGTATGGCTGCAATTTTCTTGAGGAAATTAGAGGGATTCCACCGAATCTAAATTACCTGTCTGCAATAGATTGCAAATCATTGAGTTCCTCAAGCAGAAGAATGTTATTGAGTCAGCAACTACATGACGCTGGATGTACCAATATTATTTTGCCAAGCGGAACAGAAGGGATTCCAGATTGGTTCGAGCACCAAAGCAGGGAAAACACAATTTCCTTCTGGTTTCGTAAAAAGATCCCTTCTATAACATGTATTATTATTGTTCCGGATTATGTGGTACATGAAAAATTCTTGTTTCTCAATGGCAAAGAAATTACTCTTACTGATCGTTTGTTCTATTATGTTGATCATGATGATGATGTTGTAATCTGGGGACATGCATTTTTGTTTGATCTGAAATTGGAGCAGCGTATTAACGAGAGTTTTGCAAATGAGACTGATGAACTGTACGAAGCATTTAAAAATAATGAATGGAACCATGTGGAACTTAAGTGCAAGATATATGGTCGTAATGATTGGAGTGACACGGAGGAGGATGAGGAAGAGATTAACATATTAGGCAGTGATGAGAAAGAGATTAAAATAGGAATCCACGTGTCGTGGAAGGAGAAAAGTAACACGGAGGGGGATGTGGTATTCACCAATCCTTCTAGTAGAAAGAGAAAACTAGATGAATATCTTTTCAATTATAGCAATACTTCATTATCACAATTTGTGCCTCCTCTAAAAAAGCAAAGATTGATGGAAGTTAGAGTTTCAGAGACAGAGGAGGATGCTGATTATTTTAGTAAACAGTTTCTAATTGGAATGCACTAG 3117 0.3673 MAVQSPSSSSSLSSSSCNNFNYDVFISFRGTDTRFSFTGNLYKALSDNGIRTFIDDKDLQSGDEITPSLLKNIEDSRISILVFSENYATSSFCLDELVHIIHCSKEKGSMVIPVFYGIEPSHVRHQNSSYGEALAKHEEVFQNNKESMERLRKWKKALNHAANLSGHHFNFGNEYEHHFIGKIVKDVSNKINHVPLHVADYLVGLKSRISEVNSLLELESNDGVWKIGILGTGGMGKTTLAQAVYNSIADQFECKCFLHDVRENSLKHGLEFLQEQLLSKSIRFETKFGHVNEGIPVIKRRLSQKKVLLILNDVDKLNQLENLVGEPGWLGHGSRVIITTRDKCLLSSHGIKKIYEAYGLNKEQALELVRTKTFKCNKTDASYDYILNRAVKYASGLPLALEVVGSNLFGKSIEECESTLDKYERIPHADIQKILRISYDSLDEEQQSVFLDIACFFKWHEKEYTQELLHGHYGYCIKSHIGVLVDKSLIKFNSDPNVSEFLAVTLHDLIEDMGKEIVRQESIKEPGRRSRLWCCDDIVHVLQENTGSSKIEMIILKYRPSTEPVIDMNEKAFKKMTNLKTLIVEDDNFSKGPKYLPSSLRVLEWSGFTSESLSCFSNKKFNNIKNLTLDGSKYLTHISDVSGLPNLEKLSFHCCHSLITIHNSIGYLIKLEILDAWGCNKLESFPPLQLPSLKELILSRCSSLKNFPELLCKMTNIEEIELHRTSIGELPSSFKNLSELRHLSISFVNLKILPECLSECHRLRELVLYGCNFLEEIRGIPPNLNYLSAIDCKSLSSSSRRMLLSQQLHDAGCTNIILPSGTEGIPDWFEHQSRENTISFWFRKKIPSITCIIIVPDYVVHEKFLFLNGKEITLTDRLFYYVDHDDDVVIWGHAFLFDLKLEQRINESFANETDELYEAFKNNEWNHVELKCKIYGRNDWSDTEEDEEEINILGSDEKEIKIGIHVSWKEKSNTEGDVVFTNPSSRKRKLDEYLFNYSNTSLSQFVPPLKKQRLMEVRVSETEEDADYFSKQFLIGMH* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1898 1038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 453 IPR027417 -
Mtr6g1898 1038 SUPERFAMILY "Winged helix" DNA-binding domain 430 543 IPR036390 -
Mtr6g1898 1038 SMART till_3 21 164 IPR000157 GO:0007165
Mtr6g1898 1038 PANTHER ARCHAEAL ATPASE 32 933 - -
Mtr6g1898 1038 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 166 IPR035897 -
Mtr6g1898 1038 Gene3D Ribonuclease Inhibitor 538 833 IPR032675 -
Mtr6g1898 1038 Gene3D - 359 443 IPR042197 -
Mtr6g1898 1038 Gene3D - 192 354 IPR027417 -
Mtr6g1898 1038 Gene3D - 19 191 IPR035897 -
Mtr6g1898 1038 Pfam TIR domain 21 195 IPR000157 GO:0007165
Mtr6g1898 1038 PRINTS Disease resistance protein signature 226 241 - -
Mtr6g1898 1038 PRINTS Disease resistance protein signature 301 315 - -
Mtr6g1898 1038 PRINTS Disease resistance protein signature 394 408 - -
Mtr6g1898 1038 PRINTS Disease resistance protein signature 688 704 - -
Mtr6g1898 1038 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 32 933 IPR044974 GO:0006952
Mtr6g1898 1038 Pfam NB-ARC domain 215 443 IPR002182 GO:0043531
Mtr6g1898 1038 ProSiteProfiles TIR domain profile. 20 191 IPR000157 GO:0007165
Mtr6g1898 1038 SUPERFAMILY L domain-like 561 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1898 Mtr-Chr6 34344329 34349640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1898 21 791 WRKY Transcription Factor Family AT4G12020 29.216 8.75e-75 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1898 - - mtr:MTR_6g071935 1165.6