Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1896 ATGGCTATGCAGTCAACTTCCTCTTCAGTTTCATATGATTTCAAATACCAAGTGTTTCTCAGTTTTAGAGGCGCTGACACTCGGTATGAATTTACCGGCAATCTCTACAAGGCTCTTACAGACAAGGGAATCCACACCTTTTTTGATGATCGTGAACTTCAAAGAGGGGATAAAATCGAACAATCACTCAATAATGCCATTGAAGAGTCTAGGATTTTTATTCCTGTGTTTTCTGCCAACTATGCCTCTTCTTCATTTTGTTTGGACGAACTTGTCCACATCATTCGCGTCTACAAGGAAAAGGGGCGCCTCGTTTTGCCTGTTTTCTATGGTGTGGATCCTGGTGACATACGACATCAGCGTGGGAGTTATGCTATACATCTCACTAAGCATGAAAAGAGGTTCGGAAATAACAAGGAAAACATGGAGAAATTGCTTCAATGGAAGAAGGCTCTGAAACAAGCTGCTGACTTGTCTGGCTTTCATTTTAGTCTTGGGAATGGATATGAATACAAGCGTATTGGTGAGATAATCAGAAACGTCACCAACCAGATCAATCGTGTTAGTTTACATGTTGCCAAATACCCGGTTGGATTACAGTCCCGAGTACAACAAGTGAAATCTCTTCTTGATAACGAATCTGATGATGTGGTCCATATGGTAGGACTTTACGGTATTGGAGGTTTAGGTAAATCAACACTTGCAAAAGCAACTTTTAATTCTATTGCTGATAAATTTGAAGTTTTTTGTTTTCTTGAGAACGTGAGAGAGAATTCAGCTAAGCATGGCTTGGAAAATCTCCAAGAGCAACTCCTTTTAAAAACAATTGGAGAAGAAATTAAGTTAGGAGGTGTTAGTCAAGGTATTCAAATCATAAAAGATAGACTACGCAGAAAGAAAGTTCTTCTGATTCTCGATGACATTGACAAACTGGAGCAACTAGATGCTTTGGCTGGAGGATTTGATTGGTTCGGTAATGGCAGCAGAGTCATCATTACAACTCGAGACAAACAATTACTTACCAATCATGAGATAGAATTAATGTATGAAGTAGAAGGGTTGTATGGGACAGAAGCTCTTGAATTGTTAAGGTGGATGGCTTTTAAAAATAACAAAGTACCGTCAAGTTATGAACACATTTTAAACCGTGCAGTTTCATATGCTTCGGGCCTTCCCTTAGTATTAGAAATAGTGGGTTCCAATTTGTTTGGAAAGAGCATACAAATATGGAAGGGTGCATTAGATGGATATGAAAGGATTCCTGACAAAAAGATCCAAGAGATACTTAGAGTAAGCTATGATGCTTTGGAAGAAGAGCAACAAAGTGTTTTCCTCGACATTGCTTGTTGCTTCAAAGAACATAGTTGGGAGGAGTTCGAAGATATACTTCGTACTCATTACGGCCATTGCATAAAACATCATGTTCAAGTGTTGGCAGAAAAATCTCTCATAGTGATTAGTAGATCGAAGTGGGGATATATTTATGTGACATTACATGACTTGATAAAGGACATGGGCAAAGAAGTAGTCCGACAACAATCATCTAAAGAGCCCGGTGAACGCAGCAGGCTGTGGTGTCACAATGATATTATTCATGTTTTGCAGGGAAACACAGGAACTAGTAAAGTCGAAATGCTATATATGAATTTCCCCTCCAAGAAAACTGTAATAGATTGGAATGGAAAGGCTTTCATGAAGATGACAAATCTCAAAACACTTATTATTAAAAAGGGCCATTTTTCTAAAGGTCCAGAGTACCTCCCAAGTAGTTTGAGAGTATTGAAATGGGATAGGTATCCTTCGGATTCTCTATCATCTAGTATTTTGAACAAGGCAAGTGAAATAAGTTCATTTTCCAATTGTGTATATTTATAA 1875 0.3829 MAMQSTSSSVSYDFKYQVFLSFRGADTRYEFTGNLYKALTDKGIHTFFDDRELQRGDKIEQSLNNAIEESRIFIPVFSANYASSSFCLDELVHIIRVYKEKGRLVLPVFYGVDPGDIRHQRGSYAIHLTKHEKRFGNNKENMEKLLQWKKALKQAADLSGFHFSLGNGYEYKRIGEIIRNVTNQINRVSLHVAKYPVGLQSRVQQVKSLLDNESDDVVHMVGLYGIGGLGKSTLAKATFNSIADKFEVFCFLENVRENSAKHGLENLQEQLLLKTIGEEIKLGGVSQGIQIIKDRLRRKKVLLILDDIDKLEQLDALAGGFDWFGNGSRVIITTRDKQLLTNHEIELMYEVEGLYGTEALELLRWMAFKNNKVPSSYEHILNRAVSYASGLPLVLEIVGSNLFGKSIQIWKGALDGYERIPDKKIQEILRVSYDALEEEQQSVFLDIACCFKEHSWEEFEDILRTHYGHCIKHHVQVLAEKSLIVISRSKWGYIYVTLHDLIKDMGKEVVRQQSSKEPGERSRLWCHNDIIHVLQGNTGTSKVEMLYMNFPSKKTVIDWNGKAFMKMTNLKTLIIKKGHFSKGPEYLPSSLRVLKWDRYPSDSLSSSILNKASEISSFSNCVYL* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1896 624 Gene3D - 354 437 IPR042197 -
Mtr6g1896 624 Gene3D - 184 347 IPR027417 -
Mtr6g1896 624 PANTHER ARCHAEAL ATPASE 26 615 - -
Mtr6g1896 624 SMART till_3 15 158 IPR000157 GO:0007165
Mtr6g1896 624 Gene3D - 9 183 IPR035897 -
Mtr6g1896 624 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 615 IPR044974 GO:0006952
Mtr6g1896 624 ProSiteProfiles TIR domain profile. 14 185 IPR000157 GO:0007165
Mtr6g1896 624 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 447 IPR027417 -
Mtr6g1896 624 CDD AAA 197 336 - -
Mtr6g1896 624 Pfam NB-ARC domain 201 434 IPR002182 GO:0043531
Mtr6g1896 624 PRINTS Disease resistance protein signature 220 235 - -
Mtr6g1896 624 PRINTS Disease resistance protein signature 295 309 - -
Mtr6g1896 624 PRINTS Disease resistance protein signature 388 402 - -
Mtr6g1896 624 SUPERFAMILY "Winged helix" DNA-binding domain 423 535 IPR036390 -
Mtr6g1896 624 Pfam TIR domain 15 185 IPR000157 GO:0007165
Mtr6g1896 624 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 161 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1896 Mtr-Chr6 34319670 34323888 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1896 16 607 WRKY Transcription Factor Family AT4G12020 28.501 1.59e-59 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1896 - - mtr:MTR_6g478020 849.351