Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1881 ATGCCACAGAATCAGATTCCTGATCTTTCACTTCAAATTTCTCTACCAAACAGTTCTCAAACATCAATTTGCACAACAAATGAAGTTGATGATTTAGATTCATCTTTTGATATATGGAAAAATATTAATGATGCTATTACTCATGAAGGTTTCAAATCTCATAGTGATGGTTTTTCATCTTCAATAAGAAATAGTACTCTACAAAAAACTGATACAGAACTTTCATTATCAAATTCCAAAACAAAAACAACTACTTTTTCTGAAGCTGAGAGTGTTTGGAAGAGAAAAAACTTTGTTAGATTAAGACCCTTCAATGGAATCCCTCTTTATAGTGATAACAATCCTTCTATAATAGAGAAAGATTCAAACTCTTCTCTATATCCTTCTTGTTCTGCTAGTTCTTCAACTTTTTCAAGGTTTAATGGGATAACTATAGAGAGTTTAAGACCTCAAAAGTTTCAATACATGAATCATCAGCATCATCTTCTACAGAATCAACAACAGCAGAAGGTGAATCAGTTTGGAAATTCTGAGTTTGGAAATGGATTTGTGAGGTCAAGAATGATGATGCCAAGGCAACAAAGTAATAAGAGGAACATGAGGGCTCCAAGAATGCGGTGGACTAGCTCGCTTCATAATCGATTTGTTCACGCCGTTGAGCTTCTCGGCGGCCATGAAAGAGCTACTCCTAAATCAGTTTTGGAGCTAATGGATGTGAAAGATCTAACACTAGCTCATGTCAAGAGTCATTTACAGATGTATAGAACTGTTAAAAACACTGACAAGCCAGCAGCTTCTTCAGATGGAGATGAGAATTTCATGTCCCTAACACAACCTCATGATCAAAATAAGAACTATAATGCATCTCTAGAACATGATATTGGCTACACTTCCAACACTCTATGGGCTAATTCTTCTTCAAGTAATGGAACATGGACACAAGGTAGTTCTGGAGATCATTTTGAGGAGCTTAGCACACAAGAAATCCTATCAACTCACCACATTGGAAAGCTTCCTCAGGGAAGCAACTGTATACAATCAAGAAGTTCCAAGGATCAAAACATAGACTGTCCAAATCCAAACTTGGAGTTCACATTAGGGAGATAA 1107 0.3622 MPQNQIPDLSLQISLPNSSQTSICTTNEVDDLDSSFDIWKNINDAITHEGFKSHSDGFSSSIRNSTLQKTDTELSLSNSKTKTTTFSEAESVWKRKNFVRLRPFNGIPLYSDNNPSIIEKDSNSSLYPSCSASSSTFSRFNGITIESLRPQKFQYMNHQHHLLQNQQQQKVNQFGNSEFGNGFVRSRMMMPRQQSNKRNMRAPRMRWTSSLHNRFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKNTDKPAASSDGDENFMSLTQPHDQNKNYNASLEHDIGYTSNTLWANSSSSNGTWTQGSSGDHFEELSTQEILSTHHIGKLPQGSNCIQSRSSKDQNIDCPNPNLEFTLGR* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1881 368 MobiDBLite consensus disorder prediction 335 368 - -
Mtr6g1881 368 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 147 - -
Mtr6g1881 368 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 149 368 - -
Mtr6g1881 368 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 147 IPR044847 GO:0000976|GO:0006355|GO:0010158
Mtr6g1881 368 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 149 368 IPR044847 GO:0000976|GO:0006355|GO:0010158
Mtr6g1881 368 SUPERFAMILY Homeodomain-like 200 257 IPR009057 -
Mtr6g1881 368 MobiDBLite consensus disorder prediction 335 360 - -
Mtr6g1881 368 Pfam Myb-like DNA-binding domain 204 255 IPR001005 -
Mtr6g1881 368 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 203 256 IPR006447 GO:0003677
Mtr6g1881 368 Gene3D - 202 259 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1881 Mtr-Chr6 34073507 34085845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1881 182 368 G2-like Transcription Factor Family AT5G16560 52.683 1.70e-48 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Mtr6g1881 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1881 - - cam:101493712 442.965