Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1877 ATGTCTTCGTCGGTGCAACAAGTTGTCAAGCGTGCCAAATATAAATCCACCGTGAAAGATCCTGGTACTCCTGGTGTTATCAAATTGACTCGACCGAAACTTGTTTTCAAGCCTAATGATCCAACATCAAACAACAAGCTTGACGTTGATTTCAGATTAATCAAAAGTCAAAAAAACACCAAAGAGGGGTCAAACAAACAAACGTGGCTTAAGCTTTTACATTCTCAAGGCAGTTACATCTTTGAGTTTGAAAGCTTTTCGGATCTTCATGTTTGCCGGGAATTCGCTGCTGGTATTATTAGCAAGCCTGTAGAAGCTCCAAAAGTTGTTTCAGATGAACAACTTAGCACTGCTGAAATGACACTGAGGATAAAGCTATTGGGAGAAGATAGTAAATTGAAGAAGATTCATAAGGAACTTGTGATGAGTGATAAGCTTACAGAATCAGAATTTTGGGCTACAAAGAAGAAATTGCTCGACCAAGATGAAAGCCGAAAGTTAACACAAAGGATTGGATTTAAAAATTGTTTGATCTTCGACACAAAGCCTACTACTAGTGACGGTCGGATAAATATAGTTAAATTTCAATTGACTCGAGAAATAAAATATCAGATTTTTGCTCTCAAACCAGCAATTCACCAGGCATTCCTCAATTTTGTACCGAGTAACATGAGCGAGGTAGATTTCTGGAACAAATACTTCAAAGCTGAATATCTCCATAGTACCAAAAATGCTATTGCAGCAGCTGCTGAGGCTGCTGAAGATGAGGATCTTGCTGTTTTTTTGAAAGATGACGAGATATTAAAAAATGAAGCTCGAAAGAAGGTTCGACGGATTGATCCAACTTTAGACATGGAAGCAGACCAAGGAGATGATTACACTCATCTTCCTGACCACGGGATCTTCCGTGATGGTTGCAAGGAAACATCTGAAGCTCAAAATACTCTTTATCGAAGAACGTTGTTGCAAGATCTCAACAGACAAAGTGAGGTGGTTCTTGAAGGAAAAACTTTAGATATAGATATGGAACATCCAAGAACAGAAGTAGAAGTGCTTGCTCGGAGAAAACATGAATCTGATGGGGTTGTGGAGGAGAGGCGAAACAGAATTTCTAAGACAGCCCAGATTGAAGATCTTCAGGCACAAGATAATCATCCATTTGTACCACTTTGTATCAAGGATCCTCGTGACTATTTTGATTCTCAACAAGCTAACGTAGTAAAAACCTTTGATGAGTCCCTAGCCGATAAGGAGAAAATAAGACGCAATTTGGGTTCTGAGGAAGCCTATGACTCTTTGAGGGAGTCCATATCTAACATCAAAACTATGGGATTAAGGGATCCTCTATTGAGTCATAAGGTTGCTTTTAAGGTCCTTACTGTATTGAATAAAAGCATCTCAAGCACAACTAAGGAGTGTGTCCTTGATATTTTACCCAACTCAACTAAGGAGAAACTACTAGATCATTGGGTTTGTAGTCAGGAATTACTGAGGCACTTTTGGTCTTCTTATCCAGTATCAACACAAAGTCTTGTTAGTAAGGCTACAAGACTGAAAGACGCCATATCACAAATATATTCTAAACTTGAGGAAATAAAGGTATCTGCACAGTCGAACCTACGGGACCAGGTTTCCCTTGTTGTCGATCCAATGCAGCAGGCTCTGGATGCTGCTTTGTTACATTACGATGCTGACATTCGGAGAAGAAATGATAAAGGGTCGAAGCCTAATGGTTATGTTTAG 1743 0.3941 MSSSVQQVVKRAKYKSTVKDPGTPGVIKLTRPKLVFKPNDPTSNNKLDVDFRLIKSQKNTKEGSNKQTWLKLLHSQGSYIFEFESFSDLHVCREFAAGIISKPVEAPKVVSDEQLSTAEMTLRIKLLGEDSKLKKIHKELVMSDKLTESEFWATKKKLLDQDESRKLTQRIGFKNCLIFDTKPTTSDGRINIVKFQLTREIKYQIFALKPAIHQAFLNFVPSNMSEVDFWNKYFKAEYLHSTKNAIAAAAEAAEDEDLAVFLKDDEILKNEARKKVRRIDPTLDMEADQGDDYTHLPDHGIFRDGCKETSEAQNTLYRRTLLQDLNRQSEVVLEGKTLDIDMEHPRTEVEVLARRKHESDGVVEERRNRISKTAQIEDLQAQDNHPFVPLCIKDPRDYFDSQQANVVKTFDESLADKEKIRRNLGSEEAYDSLRESISNIKTMGLRDPLLSHKVAFKVLTVLNKSISSTTKECVLDILPNSTKEKLLDHWVCSQELLRHFWSSYPVSTQSLVSKATRLKDAISQIYSKLEEIKVSAQSNLRDQVSLVVDPMQQALDAALLHYDADIRRRNDKGSKPNGYV* 581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1877 580 Pfam TFIIH p62 subunit, N-terminal domain 23 85 IPR013876 -
Mtr6g1877 580 SUPERFAMILY BSD domain-like 113 158 IPR035925 -
Mtr6g1877 580 SUPERFAMILY BSD domain-like 196 243 IPR035925 -
Mtr6g1877 580 PANTHER TRANSCRIPTION INITIATION FACTOR IIH-RELATED 5 570 IPR027079 GO:0000439|GO:0006289|GO:0006351
Mtr6g1877 580 Pfam BSD domain 194 244 IPR005607 -
Mtr6g1877 580 Gene3D - 117 163 - -
Mtr6g1877 580 ProSiteProfiles BSD domain profile. 189 241 IPR005607 -
Mtr6g1877 580 ProSiteProfiles BSD domain profile. 105 163 IPR005607 -
Mtr6g1877 580 SMART wurzfinal6 109 163 IPR005607 -
Mtr6g1877 580 SMART wurzfinal6 189 241 IPR005607 -
Mtr6g1877 580 SUPERFAMILY PH domain-like 8 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1877 Mtr-Chr6 34040692 34042434 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BSD Mtr6g1877 BSD 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1877 K03141 - gmx:100776016 854.744