Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1867 ATGGTGTTAGGTTGGGGAAGAAGGAAGAACAACAAAAACAACAAAGGTGGAAAACCAAACATGGAGGTAGTGGTTCCAAATCAATTTAGGTGTCCTATAACTCTTGATTTGATGAAAGATCCTGTGACATTGTCAACAGGAATAACCTATGATAGAGAGAGTGTTGAAAGATGGTTCAATGAAGGAAACTATACATGTCCTCTCACAAATCAAGTAGTGAGAAACTTTGACATGATTCCAAATCATTCTCTTAGGATAATGATTCAAGATTGGTGTGTTGAAAATAGACAAAATGGTGTTGAGAGGATTCCAACTCCTAGAATACCAATTAGTCCGATCGATGTTTCCGAGCTTCTTTTTCAAGTTAAAGAATCAGCAAAAGGTTTGGATCAATATGGTTGTATTGGATTGGTTCAAAAAATGGAGAAATGGAGTAATGAAAGTGAGAGGAACAAAAAATGCATAGTTGAAAATGGAGCAACTAGTGCATTAGCTTTAGCATTTGATGCTTTTGCTAATGATTCTATTGAGAAAAATGTTATTGTTCTTGAAGTGATTTTATCAGCACTTAATTGGATGTTTCCACTTCAATTAGAAGCTCAAAAATCTTTAGGTTCAAAAGCTTCTTTACATTGCATGATTTGGTTTTTGAAGCATCAAGATGTTAAGGGAAAAGAAAAAGCTATTATTGCATTGAAAGAGATTCTTTCATTTGGTGATGAGAAACATGTAGAAGCACTTATGGAAATTGAAGGAGTTAATGAGCTTTTAATTGAGTTCATTAACAAGAGAATTAGTCCAATAATTACAAAATCTTCATTGAGGATAATTTGGTACTTAGTTTCATCCAATTCAAATTTCAATGAAAAAATGAAATTCTCATTTGTTGAATTGGGTTTGGTTTCTTCAATTTTACACATTCTTATTGACTCTGAAAAAAGCATTTGTGAGAAGGCTTTAACTATTTTGGATTCTCTATTAAGCTGTGACTTTGCAAGAGAAACAGCTTATGAAAATGACTTAACAATTCCTTTGTTGGTCAAAAAAATCTTTAGAGTTTCACCTTTGACTACAGAATATTCAGTTTCTTCTATATGGAAGATGTGCAAATATGGTCACAAAAATTATGAAGGAAAAGCTTTAATTGAAGCACTTCAAGTTGGTGCTTTTCAAAAGCTATTATTGGTATTGCAAGTTGGTTGTAGTGATGAGACAAAAGATAAAGCAACTGAACTTCTCAAATTGATGAATCCTTATAGGGCTGAATTGGAAGATTGTGTTGATTCAGATTTCAAGAATCTTAAAAGATCTTATTAA 1317 0.3242 MVLGWGRRKNNKNNKGGKPNMEVVVPNQFRCPITLDLMKDPVTLSTGITYDRESVERWFNEGNYTCPLTNQVVRNFDMIPNHSLRIMIQDWCVENRQNGVERIPTPRIPISPIDVSELLFQVKESAKGLDQYGCIGLVQKMEKWSNESERNKKCIVENGATSALALAFDAFANDSIEKNVIVLEVILSALNWMFPLQLEAQKSLGSKASLHCMIWFLKHQDVKGKEKAIIALKEILSFGDEKHVEALMEIEGVNELLIEFINKRISPIITKSSLRIIWYLVSSNSNFNEKMKFSFVELGLVSSILHILIDSEKSICEKALTILDSLLSCDFARETAYENDLTIPLLVKKIFRVSPLTTEYSVSSIWKMCKYGHKNYEGKALIEALQVGAFQKLLLVLQVGCSDETKDKATELLKLMNPYRAELEDCVDSDFKNLKRSY* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1867 438 CDD RING-Ubox_PUB 29 71 IPR045210 -
Mtr6g1867 438 Gene3D - 136 430 IPR011989 -
Mtr6g1867 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 103 IPR013083 -
Mtr6g1867 438 Pfam U-box domain 25 96 IPR003613 GO:0004842|GO:0016567
Mtr6g1867 438 ProSiteProfiles U-box domain profile. 24 98 IPR003613 GO:0004842|GO:0016567
Mtr6g1867 438 MobiDBLite consensus disorder prediction 1 21 - -
Mtr6g1867 438 PANTHER WDSAM1 PROTEIN 14 438 IPR045185 GO:0061630
Mtr6g1867 438 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 14 438 - -
Mtr6g1867 438 SUPERFAMILY RING/U-box 22 100 - -
Mtr6g1867 438 SMART Ubox_2 28 91 IPR003613 GO:0004842|GO:0016567
Mtr6g1867 438 SUPERFAMILY ARM repeat 130 416 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1867 Mtr-Chr6 33894571 33896399 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1867 5 438 U-box Gene Family AT5G37490 43.439 1.12e-114 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1867 - - gmx:100794340 657.907