Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1861 ATGAGCTTGCAACAAAGACGAGAAAGGAGGGAAGGGTCGAGGTTCCCTTCACACCGTCCTCCTCGCCAAGAATGGATTCCGAAAGGAGCTGGAGCATCCAGCTCCGCCTCCACCACATCCACCACCACCACCGCCTCCACCACCACTGCCGCCGCCGCCACCACAACTGTTGACCAACCTACAAGTTTGCACTCTCATGAGAAGAACACTAATAGTGATGGTGGTTCATCCAATCAAGGGGCTGTTGTTGCTCCAACATTTGCTAGGCATAGAAGTAATCACCATGTTGCTCATAGGGTGGAAAGGGAACATGTTGCTCATAGGACGGACAGGGATCATGTTGCTCACAGGGTGGAAAGGGAACGTGTTGCGCACAGGGTGGAGAGAGAACATGTTGCCCATCGCATGGAAAGGGAACATGTTGCTCACAGGGTGGAGAGGGAACATGTTGCTCATCGTGTGGAGAGGGAACATGTTGCTCATAGGGTGGAAAGGGGTAGAGGGAGGAGTGGGAATATGGCGGGGAGGCAATATGGATCAAGGGACTCTAGCTTGCCTCAATTAGTGCAGGAGATTCAGGAGAAGCTCACGAAAGGTACCGTGGAGTGCATGATTTGTTATGATATGGTTCGTAGGTCCGCGCCTATCTGGTCTTGCTCCAGTTGCTACTCTATCTTTCACCTGAATTGCATCAAGAAGTGGGCTCGTGCGCCCACCTCAGTTGATTTATCGGCGGAGAAGAATCTAGGGTTTAACTGGCGGTGTCCTGGTTGCCAGTCTGTGCAACATACGTCTTCAAAGGATATTAAGTATGCTTGCTTTTGTGGGAAGAGGGTTGATCCTCCGTCTGATTTGTATTTGACCCCTCATTCATGCGGCGAACCGTGCGGGAAGCCTCTTGAAAAGGAGGTGTTTGTTACTGAAGAGAGAAAGGACGAGCTTTGCCCTCATGCTTGTGTCTTGCAATGCCATCCGGGTCCGTGTCCTCCATGTAAAGCATTTGCCCCTCCTCGTTTGTGCCCTTGTGGGAAGAAAAGAATTGCTACTCGCTGCTCTGATCGGCAGTCAGATCTTACCTGCGGTCAGCGCTGTGATAAGCTTCTTGATTGTGGACGTCATCACTGTGAAAATGCATGCCATGTGGGTCCTTGTGATCCTTGTCAGGTGCTAATTGAGGCCTCTTGCTTTTGCAGTAAAATGACACAGGTTCTTTTTTGTGGGGAGATGGCTATGAAAGGTGAATTTGAAGCAGAAGGTGGAGTTTTTTCTTGTGGTTCCAATTGTGGAAATGTGCTTGGCTGCAGTAATCATATCTGCCGCGAGGTTTGTCATCCGGGAAGCTGCGGTGAATGTGAATTTTTACCAAGTCGGGTTAAGGCATGCTGCTGCGGGAAAACAAAGTTGGAGGATGAACGCAAGAGTTGTGTGGATCCGATACCTACCTGCTCAAAAGTATGCAGCAAGACCCTTCGTTGTGGGGTACATGCTTGTAAGGAGACATGCCATGTCGGGGAATGTCCACCGTGTAAGGTCCTAATTTCACAGAAATGTCGTTGTGGCTCAACTTCCAGAACTGTGGAATGCTATAAAACAACAGAGAATCAGAAATTTACTTGTCAAAAGCCGTGTGGGGCAAAGAAGAATTGTGGAAGGCACCGGTGTAGTGAAAAGTGTTGTCCATTGTCTGGTCCAAATAATGGTTTGACTACTCCGGATTGGGATCCTCACTTTTGTTCCATGCTGTGTGGGAAGAAGCTGAGATGTGGTCAGCATGTGTGTGAAACGTTGTGTCACAGTGGTCATTGCCCACCTTGTCTTGAAACAATCTTCACTGATTTAGCATGTGCTTGTGGTATGACTTCAATTCCTCCTCCTCTACCTTGTGGTACAATGCCTCCCTTATGTCAGCTTCCATGTTCGGTTCCTCAGCCGTGTGGCCATTCAGGCTCTCATAGCTGCCATTTTGGAGATTGCCCTCCTTGTTCGGTGCCTGTGTCAAAAGAATGTGTCGGTGGCCATGTCATTCTTAGGAACATACCTTGTGGCTCAAATAATATTAAATGCAATAATCCCTGTGGAAGGACTAGACAATGCGGTTTACATGCATGTGGTAGATCATGTCACTCCCCACCTTGTGATATTCTACCTGGTATTGTGAAAGGTTTACGAGCGGCATGTGGACAGACATGTGGTGCTCCAAGGAGTGGCTGCCGGCACATGTGTATGGCTCTCTGTCACCCTGGATGTCCTTGTCCCGATGCAAGATGTGAATTCCCCGTTACAATTACTTGTTCTTGTGGCCGCATATCAGCGAATGTTCCTTGCGATGTTGGTGGTAATAACAGTAATTATAATGCTGATGCGATTTTTGAAGCTTCGATCATTCAAAAATTGCCCATGCCACTTCAACCAGTCGATGCAAATGGCCAAAAAGTTCCTCTTGGACAAAGAAAGCTGATGTGTGACGAAGAATGTGCTAAGTTGGAGCGTAAAAGGGTTCTTGCTGATGCCTTTGACATCACTCCAAGTCTTGATGCTCTCCATTTCGGTGAGAATTCTTCTTATGAGTTGCTTTCTGACACGTTTAGACGTGATCCAAAGTGGGTTTTGGCTATTGAGGAGAGATGCAAAATATTAGTACTTGGGAAAAGCAAAGGAACTACACATGGTTTGAAAGTCCATGTCTTTTGTCCTATGATAAAGGATAAAAGAGATGCAGTGAGAATGATTGCTGAAAGATGGAAGCTTGCAGTAAACGCTGCTGGTTGGGAGCCAAAGAGATTCATCGTAATTTCTGCCACTCAAAAATCGAAGGCCCCGGCTCGTGTGCTTGGTGTTAAGGGTACCACAACTCTAAATGCGCCACTTCCTACTGCATTTGATCCCTTGGTTGACATGGACCCACGGCTTGTTGTCTCGTTTCCAGACTTGCCAAGGGACGCCGATATTAGTGCCTTGGTTTTGAGATTCGGCGGTGAATGTGAGCTTGTTTGGTTGAATGACAGGAATGCTTTGGCCGTCTTTCACGATCCTGCCCGAGCTGCAACTGCGATGAGGAGGTTGGATCACGGAACAGTTTATCAGGGTGCTGTTTCGTTTGTCCAGAATGCTGGAGCATCTGCAGCGTCTTCGGTTACCAGTGCCTGGGGAGGAACAAAAGAGGGAGCACTGAGAAGCAATCCATGGAAAAAGGCAGCGGTTCTCGACCCGGGTTGGAAAGAAGATTCTTGGGGCGATGAACAATGGACTACTGCCGGTGATTCTGCGAATATCCAACCATCGGCTCTGAAGAAAGAAGCGCCAATACCTGCTTCATTGAATCCTTGGAATGTTTTGAATCATGAATCGAGTTCGAGTTCATCACCAGCAACTGTCATTAGAAGTGTAGCTTCTGGAAAACAAACTGAAAGCGGCAATGTCTCAACTAAGGTGGAGCCTTCTGCAGGTGGCGCAGATGGAGGAAACTCGGATGCAACAGAAGCTGCTGAAGTTGTAGATGATTGGGAGAAGGCTTTTGAATGA 3522 0.4796 MSLQQRRERREGSRFPSHRPPRQEWIPKGAGASSSASTTSTTTTASTTTAAAATTTVDQPTSLHSHEKNTNSDGGSSNQGAVVAPTFARHRSNHHVAHRVEREHVAHRTDRDHVAHRVERERVAHRVEREHVAHRMEREHVAHRVEREHVAHRVEREHVAHRVERGRGRSGNMAGRQYGSRDSSLPQLVQEIQEKLTKGTVECMICYDMVRRSAPIWSCSSCYSIFHLNCIKKWARAPTSVDLSAEKNLGFNWRCPGCQSVQHTSSKDIKYACFCGKRVDPPSDLYLTPHSCGEPCGKPLEKEVFVTEERKDELCPHACVLQCHPGPCPPCKAFAPPRLCPCGKKRIATRCSDRQSDLTCGQRCDKLLDCGRHHCENACHVGPCDPCQVLIEASCFCSKMTQVLFCGEMAMKGEFEAEGGVFSCGSNCGNVLGCSNHICREVCHPGSCGECEFLPSRVKACCCGKTKLEDERKSCVDPIPTCSKVCSKTLRCGVHACKETCHVGECPPCKVLISQKCRCGSTSRTVECYKTTENQKFTCQKPCGAKKNCGRHRCSEKCCPLSGPNNGLTTPDWDPHFCSMLCGKKLRCGQHVCETLCHSGHCPPCLETIFTDLACACGMTSIPPPLPCGTMPPLCQLPCSVPQPCGHSGSHSCHFGDCPPCSVPVSKECVGGHVILRNIPCGSNNIKCNNPCGRTRQCGLHACGRSCHSPPCDILPGIVKGLRAACGQTCGAPRSGCRHMCMALCHPGCPCPDARCEFPVTITCSCGRISANVPCDVGGNNSNYNADAIFEASIIQKLPMPLQPVDANGQKVPLGQRKLMCDEECAKLERKRVLADAFDITPSLDALHFGENSSYELLSDTFRRDPKWVLAIEERCKILVLGKSKGTTHGLKVHVFCPMIKDKRDAVRMIAERWKLAVNAAGWEPKRFIVISATQKSKAPARVLGVKGTTTLNAPLPTAFDPLVDMDPRLVVSFPDLPRDADISALVLRFGGECELVWLNDRNALAVFHDPARAATAMRRLDHGTVYQGAVSFVQNAGASAASSVTSAWGGTKEGALRSNPWKKAAVLDPGWKEDSWGDEQWTTAGDSANIQPSALKKEAPIPASLNPWNVLNHESSSSSSPATVIRSVASGKQTESGNVSTKVEPSAGGADGGNSDATEAAEVVDDWEKAFE* 1174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1861 1173 ProSiteProfiles Zinc finger PHD-type profile. 200 261 IPR019787 -
Mtr6g1861 1173 CDD NF-X1-zinc-finger 292 353 - -
Mtr6g1861 1173 Pfam NF-X1 type zinc finger 645 662 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 Pfam NF-X1 type zinc finger 370 388 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 Pfam NF-X1 type zinc finger 317 332 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 Pfam NF-X1 type zinc finger 698 713 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 Pfam NF-X1 type zinc finger 549 560 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 Pfam NF-X1 type zinc finger 588 605 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 Pfam NF-X1 type zinc finger 492 510 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 Pfam NF-X1 type zinc finger 434 451 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 CDD NF-X1-zinc-finger 360 408 - -
Mtr6g1861 1173 ProSiteProfiles Zinc finger RING-type profile. 203 259 IPR001841 -
Mtr6g1861 1173 CDD RING-CH-C4HC3_NFX1 202 259 - -
Mtr6g1861 1173 MobiDBLite consensus disorder prediction 1113 1144 - -
Mtr6g1861 1173 CDD NF-X1-zinc-finger 726 775 - -
Mtr6g1861 1173 SUPERFAMILY RING/U-box 193 263 - -
Mtr6g1861 1173 MobiDBLite consensus disorder prediction 1 18 - -
Mtr6g1861 1173 MobiDBLite consensus disorder prediction 1113 1173 - -
Mtr6g1861 1173 CDD NF-X1-zinc-finger 635 683 - -
Mtr6g1861 1173 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 171 1169 - -
Mtr6g1861 1173 CDD NF-X1-zinc-finger 482 530 - -
Mtr6g1861 1173 CDD NF-X1-zinc-finger 424 469 - -
Mtr6g1861 1173 SMART znfxneu3 434 453 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 SMART znfxneu3 492 511 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 SMART znfxneu3 549 580 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 SMART znfxneu3 588 607 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 SMART znfxneu3 645 663 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 SMART znfxneu3 737 758 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 SMART znfxneu3 315 333 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 SMART znfxneu3 698 728 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 SMART znfxneu3 370 389 IPR000967 GO:0005634|GO:0008270
Mtr6g1861 1173 CDD NF-X1-zinc-finger 578 630 - -
Mtr6g1861 1173 MobiDBLite consensus disorder prediction 1 81 - -
Mtr6g1861 1173 MobiDBLite consensus disorder prediction 30 81 - -
Mtr6g1861 1173 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 171 1169 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1861 Mtr-Chr6 33793048 33798228 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Mtr6g1861 zf-NF-X1 9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1861 K12236 - gmx:100819219 1642.86