Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1826 ATGGAAAGAGAATTCCTTGGCTTCAGTTCCAAAAATAGTCCATGGACTACCATGAAAGAAGATGCTTCCAACAAACCAAAAGACCAAGTTAGGAGTTCAGGAATGCAGTGGTCATTTTCAAATAAGGTTTCAAACCTTCCTCAATTCATGTCATTCAAGAATAACACTCATGAAGATAGGTCAAGAAACAATGTTATGGATCCAGTAGCTTCATCTGGATATATGACTATTTCAACTAAAGATGCTTTTGATTCTAATCAGAAATCATTCTTGGGTGTGACACAGGAAAATTTGGCCATAAAGCAAGTAGGAAACAAGCATGGAATTACAATTTATCCTATACAAAGTTCTGATGCACAATCAGTTTGCAATCAAGAAGCAAGAACAATTTCAGTTTCAAACCAATCTAATCATGTTATAACTGGAATCAACATGGTTAATTCAGTTACAAACTCTCAAACTTTTGGTTCAAAATCCTCTGCCACACCTTTATCTGTTCTTCCATCAAAAGGTCCCATAGTTGGCTCTACTGACTTAAGGAGTAGGAATTGTTCCAAATCCAATGGTACTACACCTGCTCAGTTGACCATATTTTATGGTGGTACAGTTTGCGTGTATGATGACATCTCTCCTGAGAAGGCCAAGGCAATCATGTTACTAGCTGGAAATGGAACTAAAATGCAGCAAGAAATCTCTATTCCTTCCAAAAAGGATAATTTCATTATAAGCCAACCCTATCCTTCACCATTGCCAAGCCCTATTCCAATGACCTCTCATGCAAGTACTCAACCAAGGGGAGGTTCAAGTAGCAACAATGAAGTTACAATAATAAGAACTTTAGGACATTCAATTGCCAAGTCCTCTCACAATGACCTATCTCATCTCTCATCATTGCCAAGTCCTCTCCCAATGACCTCTCATGCAAGTTCTTATCCTAAGGGAGGTTCAAGTAGCAACAATGAAGTTACAATAATAAGATCTTTAGGACCTTCAAATGCCCCTACTAACCATTTGGAATCTCCTATTGTTGCTACTTCTGTAGGATTAACACCTACAAATGTGATTCAACCAGTTGGCTTGCCTCAAGCGCGAAAAGCATCGCTAACTCGGTTTTTGGAGAAGCGAAAGGAAAGGGCAATGAGCACATCACCATACTATATGAGCAAAATATCACCTGAATGCAGCACTGGATCAGACAATGCTAGTTTCTCCATTGATTTCTCTGGTTCAAGTACTCAACCACCAACCAATTTGCCTTTAAGAAGAACATGTATGGAAGTGATTAGATAA 1290 0.386 MEREFLGFSSKNSPWTTMKEDASNKPKDQVRSSGMQWSFSNKVSNLPQFMSFKNNTHEDRSRNNVMDPVASSGYMTISTKDAFDSNQKSFLGVTQENLAIKQVGNKHGITIYPIQSSDAQSVCNQEARTISVSNQSNHVITGINMVNSVTNSQTFGSKSSATPLSVLPSKGPIVGSTDLRSRNCSKSNGTTPAQLTIFYGGTVCVYDDISPEKAKAIMLLAGNGTKMQQEISIPSKKDNFIISQPYPSPLPSPIPMTSHASTQPRGGSSSNNEVTIIRTLGHSIAKSSHNDLSHLSSLPSPLPMTSHASSYPKGGSSSNNEVTIIRSLGPSNAPTNHLESPIVATSVGLTPTNVIQPVGLPQARKASLTRFLEKRKERAMSTSPYYMSKISPECSTGSDNASFSIDFSGSSTQPPTNLPLRRTCMEVIR* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1826 429 Pfam Jas motif 361 386 IPR018467 -
Mtr6g1826 429 MobiDBLite consensus disorder prediction 255 272 - -
Mtr6g1826 429 MobiDBLite consensus disorder prediction 245 272 - -
Mtr6g1826 429 Pfam tify domain 191 222 IPR010399 -
Mtr6g1826 429 MobiDBLite consensus disorder prediction 1 32 - -
Mtr6g1826 429 MobiDBLite consensus disorder prediction 288 337 - -
Mtr6g1826 429 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 246 286 - -
Mtr6g1826 429 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 291 429 - -
Mtr6g1826 429 PANTHER JASMONATE ZIM-DOMAIN PROTEIN 35 248 - -
Mtr6g1826 429 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 35 248 IPR040390 -
Mtr6g1826 429 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 246 286 IPR040390 -
Mtr6g1826 429 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 291 429 IPR040390 -
Mtr6g1826 429 ProSiteProfiles Tify domain profile. 188 223 IPR010399 -
Mtr6g1826 429 SMART tify_2 188 223 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1826 Mtr-Chr6 33184800 33191347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1826 35 391 Tify Gene Family AT3G17860 37.634 1.48e-45 158
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Mtr6g1826 tify 2.8e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1826 K13464 - gmx:100807288 429.483