Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1749 ATGGCATCATCAGGTGAAGTTGCTAAGAAGATGGATAAAGAAGAAAACGTAAACAATGGCGATGATGTGCATGATATAGAAAATGACGGTAGCTTGGATGGGAATGATGAACAAATTGGAAGGTATTGGTCACAGTTTTCTGAAAGGAACATGACGTACGAAGAACCACTTCTTGTGAAGAGGATTAACACTACCTCTCAGATTGCTATAGTTGGTTCCAACCTTTGCCCTATTGAAAGCCTTGATTATGAGGTTTTTGATAATGAAATGTTTAACCAGGACTGGAGGTCCAGGAAGAGGGTTCAGATATTCCAATATGTGGTACTTAAATGGGTATTTGCTCTTCTTATTGGATTAGGAACTGGACTTGTTGGTCTTTTCAATAATATTTCTGTCGAGAACATAGCTGGTTTCAAGCTGACTCTTACAACCGATCTCATGTCTAAACAAAGATTTTTTGAGGCTTTTCTAGCATATGCTGGTCTCAATATGGTTTTAGCAGCTGCGGCTGCAGCACTCTGTGCTTTCATTGCTCCTTCAGCAGCAGGCTCTGGCATACCGGAGGTTAAAGCATATCTCAACGGCATCGATGCTCATTCTATTCTGGCCCCAACCACCCTTTTTGTAAAGATTGTTGGTTCAATCCTTGGAGTATCTGCTGGATTTGTGGTGGGAAAAGAAGGACCTATGGTTCATACAGGAGCATGCATAGCTTCTATTTTGGGGCAAGGCGGATCTAAAAAGTATGGTTTGACTTGGAGTTGGCTTAGGTATTTCAAAAACGATCGAGACCGACGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTCGCTGCCGCCTTTCGATCTCCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAAGCAGCTTCTTGGTGGAGGAGTGCTCTTCTTTGGAGGTCATTTTTCACTACAGCAGTAGTTGCTATTGTTTTAAGAGCTGGAATTCAGTTTTGTTCAACAGGAAAATGTGGACTATTTGGTGAAGGTGGTCTTATATTGTATGATGTTGGTTCACCCCAAACAGAATTTAGTGCCGGTGACATAGTAGCAGTAATAGTCTTGGGAACTGTTGCCGGTATTCTTGGAAGCATATATAATTTCCTCGTCGATAAGGTCGTCCGTACATATAGCATCATCAATGAAAAAGGTCCATTTTTCAAAATCTTTCTTGCTGTTGCAATTTCTCTTTTGACATCATGCTGTTATTATTTCTTACCATGGATTGCAAACTGTATCCCTTGTCCTACCGATTCAAAGGTACCATGTCCCTCTGTTGACGAATCAGGAGAATACAAAATCTTTCAATGTCCACCGGGATACTACAACGATCTCGCTTCCCTCTTTCTAAACACCAACGATGACGCTATTCGTAATCTATTCAGTCCTAAGATAACCAAAGAGTTTCATATTTCAAGTTTGTTTATCTTCTTTGCCACCGTTTACTTTCTTGGAATACTCACTTATGGCATTGCTGTTCCATCTGGACTTTTCATTCCTGTGATACTTGCCGGGGCTGCCTACGGCCGCGTTGTGAGTAGACTATTCGAACCGATCACGCAACTCGACAGAGGATTCTTTTCTCTCCTAGGAGCTGCCTCCATGCTCGGTGGCACCATGAGAATGACAGTCTCAATTTGTGTTATATTACTTGAACTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTATTAATCTCAAAATCTGTGGCCGATATCTTCAACAAAGGTGTCTATGATCAAATCTTGAAGATCAAAGGACTTCCTTATTTGGAAGCACATGCCGAACCTTACATGAGGAATATAGCTACACGTGATGTTGTCTCGGGTCCATTGATGACCTTTTCTGGCATCGAAAAGGTTGGGAATATATTACATGTTTTGAATACTACAGGGCACAACGGGTTTCCGGTCATTGACGAACCGCCTTTTGTGGATGCACCAGAGTTGTGTGGACTAGTACTGAGGTCTTATTTACTAGTTTTACTAAAGGCTAAAAATTTTACTAGAGAGAAGGTTTACGCGAATCCGAGTATCTTAGAGAATATTTCTGTGTTGGATTTTGGAAAGGCGGGATCAGGAAAGGGAGTTAAACTAGAGGACTTAGATATCCAAGATGAAGATTTGGATATGTATGTTGATCTTCATCCAATAACTAATACATCGCCGTACACTGTAGTTGAGACTATGTCACTTGCTAAAGCCGCTATTCTTTTCCGCCAACATGGACTCAGACACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCTCCTATTGTCGGGATTCTAACGCGCCATGATTTCATGCCGGAGCATGTTTTGGGACTTTACCCTGATATCAAGCATCACAAATGGCACTGA 2388 0.4188 MASSGEVAKKMDKEENVNNGDDVHDIENDGSLDGNDEQIGRYWSQFSERNMTYEEPLLVKRINTTSQIAIVGSNLCPIESLDYEVFDNEMFNQDWRSRKRVQIFQYVVLKWVFALLIGLGTGLVGLFNNISVENIAGFKLTLTTDLMSKQRFFEAFLAYAGLNMVLAAAAAALCAFIAPSAAGSGIPEVKAYLNGIDAHSILAPTTLFVKIVGSILGVSAGFVVGKEGPMVHTGACIASILGQGGSKKYGLTWSWLRYFKNDRDRRDMITCGAAAGVAAAFRSPVGGVLFALEEAASWWRSALLWRSFFTTAVVAIVLRAGIQFCSTGKCGLFGEGGLILYDVGSPQTEFSAGDIVAVIVLGTVAGILGSIYNFLVDKVVRTYSIINEKGPFFKIFLAVAISLLTSCCYYFLPWIANCIPCPTDSKVPCPSVDESGEYKIFQCPPGYYNDLASLFLNTNDDAIRNLFSPKITKEFHISSLFIFFATVYFLGILTYGIAVPSGLFIPVILAGAAYGRVVSRLFEPITQLDRGFFSLLGAASMLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLISKSVADIFNKGVYDQILKIKGLPYLEAHAEPYMRNIATRDVVSGPLMTFSGIEKVGNILHVLNTTGHNGFPVIDEPPFVDAPELCGLVLRSYLLVLLKAKNFTREKVYANPSILENISVLDFGKAGSGKGVKLEDLDIQDEDLDMYVDLHPITNTSPYTVVETMSLAKAAILFRQHGLRHMCVVPKSQGRPPIVGILTRHDFMPEHVLGLYPDIKHHKWH* 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1749 795 PRINTS Chloride channel signature 179 196 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr6g1749 795 PRINTS Chloride channel signature 210 229 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr6g1749 795 PRINTS Chloride channel signature 274 293 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr6g1749 795 PRINTS Chloride channel signature 499 519 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr6g1749 795 PRINTS Chloride channel signature 531 547 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr6g1749 795 PRINTS Chloride channel signature 549 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr6g1749 795 PRINTS Chloride channel signature 587 601 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr6g1749 795 SUPERFAMILY CBS-domain pair 604 778 IPR046342 -
Mtr6g1749 795 CDD ClC_6_like 79 600 - -
Mtr6g1749 795 PRINTS Plant CLC chloride channel signature 84 92 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr6g1749 795 PRINTS Plant CLC chloride channel signature 295 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr6g1749 795 PRINTS Plant CLC chloride channel signature 309 319 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr6g1749 795 PRINTS Plant CLC chloride channel signature 327 334 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr6g1749 795 PRINTS Plant CLC chloride channel signature 451 467 IPR002251 GO:0005247|GO:0006821|GO:0016020
Mtr6g1749 795 SUPERFAMILY Clc chloride channel 88 603 IPR014743 -
Mtr6g1749 795 MobiDBLite consensus disorder prediction 7 31 - -
Mtr6g1749 795 MobiDBLite consensus disorder prediction 1 36 - -
Mtr6g1749 795 Gene3D - 601 779 IPR046342 -
Mtr6g1749 795 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 41 793 - -
Mtr6g1749 795 Pfam Voltage gated chloride channel 167 581 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Mtr6g1749 795 ProSiteProfiles CBS domain profile. 727 789 IPR000644 -
Mtr6g1749 795 Pfam CBS domain 729 777 IPR000644 -
Mtr6g1749 795 Gene3D Clc chloride channel 102 600 - -
Mtr6g1749 795 PANTHER CHLORIDE CHANNEL PROTEIN CLC-C 41 793 - -
Mtr6g1749 795 CDD CBS_pair_voltage-gated_CLC_euk_bac 614 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1749 Mtr-Chr6 32169769 32177284 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1749 22 789 Ion Channels AT5G49890 69.780 0.0 1083
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1749 K05016 - gmx:100809070 1240.33