LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr6g1749	ATGGCATCATCAGGTGAAGTTGCTAAGAAGATGGATAAAGAAGAAAACGTAAACAATGGCGATGATGTGCATGATATAGAAAATGACGGTAGCTTGGATGGGAATGATGAACAAATTGGAAGGTATTGGTCACAGTTTTCTGAAAGGAACATGACGTACGAAGAACCACTTCTTGTGAAGAGGATTAACACTACCTCTCAGATTGCTATAGTTGGTTCCAACCTTTGCCCTATTGAAAGCCTTGATTATGAGGTTTTTGATAATGAAATGTTTAACCAGGACTGGAGGTCCAGGAAGAGGGTTCAGATATTCCAATATGTGGTACTTAAATGGGTATTTGCTCTTCTTATTGGATTAGGAACTGGACTTGTTGGTCTTTTCAATAATATTTCTGTCGAGAACATAGCTGGTTTCAAGCTGACTCTTACAACCGATCTCATGTCTAAACAAAGATTTTTTGAGGCTTTTCTAGCATATGCTGGTCTCAATATGGTTTTAGCAGCTGCGGCTGCAGCACTCTGTGCTTTCATTGCTCCTTCAGCAGCAGGCTCTGGCATACCGGAGGTTAAAGCATATCTCAACGGCATCGATGCTCATTCTATTCTGGCCCCAACCACCCTTTTTGTAAAGATTGTTGGTTCAATCCTTGGAGTATCTGCTGGATTTGTGGTGGGAAAAGAAGGACCTATGGTTCATACAGGAGCATGCATAGCTTCTATTTTGGGGCAAGGCGGATCTAAAAAGTATGGTTTGACTTGGAGTTGGCTTAGGTATTTCAAAAACGATCGAGACCGACGAGACATGATTACTTGTGGTGCAGCTGCTGGTGTCGCTGCCGCCTTTCGATCTCCAGTAGGTGGTGTCCTCTTTGCCCTTGAAGAAGCAGCTTCTTGGTGGAGGAGTGCTCTTCTTTGGAGGTCATTTTTCACTACAGCAGTAGTTGCTATTGTTTTAAGAGCTGGAATTCAGTTTTGTTCAACAGGAAAATGTGGACTATTTGGTGAAGGTGGTCTTATATTGTATGATGTTGGTTCACCCCAAACAGAATTTAGTGCCGGTGACATAGTAGCAGTAATAGTCTTGGGAACTGTTGCCGGTATTCTTGGAAGCATATATAATTTCCTCGTCGATAAGGTCGTCCGTACATATAGCATCATCAATGAAAAAGGTCCATTTTTCAAAATCTTTCTTGCTGTTGCAATTTCTCTTTTGACATCATGCTGTTATTATTTCTTACCATGGATTGCAAACTGTATCCCTTGTCCTACCGATTCAAAGGTACCATGTCCCTCTGTTGACGAATCAGGAGAATACAAAATCTTTCAATGTCCACCGGGATACTACAACGATCTCGCTTCCCTCTTTCTAAACACCAACGATGACGCTATTCGTAATCTATTCAGTCCTAAGATAACCAAAGAGTTTCATATTTCAAGTTTGTTTATCTTCTTTGCCACCGTTTACTTTCTTGGAATACTCACTTATGGCATTGCTGTTCCATCTGGACTTTTCATTCCTGTGATACTTGCCGGGGCTGCCTACGGCCGCGTTGTGAGTAGACTATTCGAACCGATCACGCAACTCGACAGAGGATTCTTTTCTCTCCTAGGAGCTGCCTCCATGCTCGGTGGCACCATGAGAATGACAGTCTCAATTTGTGTTATATTACTTGAACTCACTAATGATCTCTTGTTACTTCCACTTGTGATGTTGGTCTTATTAATCTCAAAATCTGTGGCCGATATCTTCAACAAAGGTGTCTATGATCAAATCTTGAAGATCAAAGGACTTCCTTATTTGGAAGCACATGCCGAACCTTACATGAGGAATATAGCTACACGTGATGTTGTCTCGGGTCCATTGATGACCTTTTCTGGCATCGAAAAGGTTGGGAATATATTACATGTTTTGAATACTACAGGGCACAACGGGTTTCCGGTCATTGACGAACCGCCTTTTGTGGATGCACCAGAGTTGTGTGGACTAGTACTGAGGTCTTATTTACTAGTTTTACTAAAGGCTAAAAATTTTACTAGAGAGAAGGTTTACGCGAATCCGAGTATCTTAGAGAATATTTCTGTGTTGGATTTTGGAAAGGCGGGATCAGGAAAGGGAGTTAAACTAGAGGACTTAGATATCCAAGATGAAGATTTGGATATGTATGTTGATCTTCATCCAATAACTAATACATCGCCGTACACTGTAGTTGAGACTATGTCACTTGCTAAAGCCGCTATTCTTTTCCGCCAACATGGACTCAGACACATGTGTGTTGTTCCAAAGAGCCAAGGGAGACCTCCTATTGTCGGGATTCTAACGCGCCATGATTTCATGCCGGAGCATGTTTTGGGACTTTACCCTGATATCAAGCATCACAAATGGCACTGA	2388	0.4188	MASSGEVAKKMDKEENVNNGDDVHDIENDGSLDGNDEQIGRYWSQFSERNMTYEEPLLVKRINTTSQIAIVGSNLCPIESLDYEVFDNEMFNQDWRSRKRVQIFQYVVLKWVFALLIGLGTGLVGLFNNISVENIAGFKLTLTTDLMSKQRFFEAFLAYAGLNMVLAAAAAALCAFIAPSAAGSGIPEVKAYLNGIDAHSILAPTTLFVKIVGSILGVSAGFVVGKEGPMVHTGACIASILGQGGSKKYGLTWSWLRYFKNDRDRRDMITCGAAAGVAAAFRSPVGGVLFALEEAASWWRSALLWRSFFTTAVVAIVLRAGIQFCSTGKCGLFGEGGLILYDVGSPQTEFSAGDIVAVIVLGTVAGILGSIYNFLVDKVVRTYSIINEKGPFFKIFLAVAISLLTSCCYYFLPWIANCIPCPTDSKVPCPSVDESGEYKIFQCPPGYYNDLASLFLNTNDDAIRNLFSPKITKEFHISSLFIFFATVYFLGILTYGIAVPSGLFIPVILAGAAYGRVVSRLFEPITQLDRGFFSLLGAASMLGGTMRMTVSICVILLELTNDLLLLPLVMLVLLISKSVADIFNKGVYDQILKIKGLPYLEAHAEPYMRNIATRDVVSGPLMTFSGIEKVGNILHVLNTTGHNGFPVIDEPPFVDAPELCGLVLRSYLLVLLKAKNFTREKVYANPSILENISVLDFGKAGSGKGVKLEDLDIQDEDLDMYVDLHPITNTSPYTVVETMSLAKAAILFRQHGLRHMCVVPKSQGRPPIVGILTRHDFMPEHVLGLYPDIKHHKWH*	796

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr6g1749	795	PRINTS	Chloride channel signature	179	196	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Mtr6g1749	795	PRINTS	Chloride channel signature	210	229	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Mtr6g1749	795	PRINTS	Chloride channel signature	274	293	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Mtr6g1749	795	PRINTS	Chloride channel signature	499	519	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Mtr6g1749	795	PRINTS	Chloride channel signature	531	547	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Mtr6g1749	795	PRINTS	Chloride channel signature	549	568	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Mtr6g1749	795	PRINTS	Chloride channel signature	587	601	IPR001807	GO:0005247\|GO:0006821\|GO:0016020\|GO:0055085
	Mtr6g1749	795	SUPERFAMILY	CBS-domain pair	604	778	IPR046342	-
	Mtr6g1749	795	CDD	ClC_6_like	79	600	-	-
	Mtr6g1749	795	PRINTS	Plant CLC chloride channel signature	84	92	IPR002251	GO:0005247\|GO:0006821\|GO:0016020

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr6g1749	Mtr-Chr6	32169769	32177284	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr6g1749	22	789	Ion Channels	AT5G49890	69.780	0.0	1083

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr6g1749	K05016		-	gmx:100809070	1240.33

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