Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1720 ATGCCCATCATGAAAAAGAATTCCGAGCAGAATCGTTTTGAAGCTGTATTTACCAAGCTGATGAACAATCTTGGTGAAACTGTTGACTTTGAACTTCCAGATTCGATTAAAAACAGGACAACGCAGTACACCCATATAAAGCGCAATGTATATGTCACTAAGAACCGCAAGAGAAAGAGTGATGATGGTATATTCTGTTCTTGCGAATCGTCATCTGATTCTACTGCTGTATGTGGTAGAGATTGCCACTGTGGGATGCTTCTGTCTAGCTGTTCTTCAGGCTGCAAATGTGGGATCTCATGTCTCAACAAAGCTTTTCAGCACCGTCCTGTTAAAAAGATGAAATTAGTCAAGACTGAGAAATGTGGATCTGGAATTGTGGCAGATGAAGATATAAAGCTTGGGGAGTTTGTAATTGAATATGTCGGAGAAGTTATCGATGATAAAACATGCGAACAGAGGCTTTGGAATATGAAAGATCGCGGGGAAACAAACTTCTACTTATGCGAAATCAATCGAGATATGGTGATAGATGCGACAAATAAAGGAAACAAGTCAAGATACATCAACCATAGTTGCTGCCCGAATACTGAGATGCAGAAATGGATAATAGATGGTGAAACTAGAATCGGCATATTTGCAAGTCGTGATATAAAGAAGGGAGAACATCTGACTTACGACTACCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGTTCAGTGTAGGCGTAAGCTGGGTGCGCGACCTACCAAGCCTAAGTTAGTGGCATATCAGACTAATTGTGGGTTGCTTTCGTCTGGACAGGTTTATCAGAATGGAGGCCTGCAAACTGGTAGTTCTCGGGTTGTTGACCATTCAAAATGCTTACTCAATTGCATCGATGAAGTTATTATGATAAAACAACTTGGAAATCTGAGATTTGGGATTATTAAATGGTTCGATGAATATTCTCGAAAACACAAGATCATGTTTGAGGATGGTTGTGTTGAAATCTATGACATGTCAAAAGAAGATTGGGAACTAGTGAGATTGTGA 1050 0.401 MPIMKKNSEQNRFEAVFTKLMNNLGETVDFELPDSIKNRTTQYTHIKRNVYVTKNRKRKSDDGIFCSCESSSDSTAVCGRDCHCGMLLSSCSSGCKCGISCLNKAFQHRPVKKMKLVKTEKCGSGIVADEDIKLGEFVIEYVGEVIDDKTCEQRLWNMKDRGETNFYLCEINRDMVIDATNKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFASRDIKKGEHLTYDYQFVQFGADQDCHCGAVQCRRKLGARPTKPKLVAYQTNCGLLSSGQVYQNGGLQTGSSRVVDHSKCLLNCIDEVIMIKQLGNLRFGIIKWFDEYSRKHKIMFEDGCVEIYDMSKEDWELVRL* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1720 349 Gene3D SET domain 14 264 IPR046341 -
Mtr6g1720 349 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ASHH3 6 347 - -
Mtr6g1720 349 Pfam SET domain 123 228 IPR001214 GO:0005515
Mtr6g1720 349 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 28 301 IPR025787 -
Mtr6g1720 349 PANTHER SET DOMAIN PROTEINS 6 347 - -
Mtr6g1720 349 SMART shorttest3 61 111 IPR006560 GO:0005634|GO:0018024
Mtr6g1720 349 SMART set_7 112 235 IPR001214 GO:0005515
Mtr6g1720 349 CDD SET_ASHR3-like 113 251 - -
Mtr6g1720 349 ProSiteProfiles SET domain profile. 112 229 IPR001214 GO:0005515
Mtr6g1720 349 ProSiteProfiles Post-SET domain profile. 235 251 IPR003616 -
Mtr6g1720 349 SUPERFAMILY SET domain 39 247 IPR046341 -
Mtr6g1720 349 ProSiteProfiles AWS domain profile. 61 110 IPR006560 GO:0005634|GO:0018024
Mtr6g1720 349 SMART PostSET_3 235 251 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1720 Mtr-Chr6 31754305 31763435 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1720 85 247 C2H2 Transcription Factor Family AT2G23740 34.973 1.83e-23 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mtr6g1720 SET 3.9e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1720 - - gmx:100808183 573.933