Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1675 ATGGCATCATCACCAACTGCCAACAACAACAAGATGGATTATTTTAAACCTACTCGTCGTGGATCCACTGATATTGGTTGGTGGTGGAATTCTTTCAAAGACGAGAATCAAAAAACAATTGTTTGTCATTTCTGTGGACATCCTTCAACTGGAGGGATCACTAGAGCCAAATATCATCAATTAGGGATCAAGGGACGAGAAGTGAAACCTTGTGAGAAAACACCTGAGGATGTAAAAATCCTTCTGAAAAATTATTTTGATTCAAAGCAAGCCGCTAAGGATGCGTGTTCTGGGCCTGCAAAGGGGTTGCCAATGCAGACTCTGGAAAGTGCTCCAGCGCCTAATTGTACAAAGGAACGGAAGAAGAGGGGTAGGCCTTTGCAGTATGAATTGGGAAGTAAGGCAGCGCTGTCACCTATGCCAGTTTCGTTTGCATTTCCGATGACCGGAGAATTTTCGGCCTCAAATAGGGGTAGAGGATTAAATGATTTTAAAGATGATGGGCCATCAAACTCCATTGGTTCCCATTTCTCACATCACGCCTTTATAGTGAATTCTGGCGAGGATGTTGCTTCGAGAATTTCCCTTCTAGCTCTGGATTTCCAAGCTATATCCGTTCTATCTGGATCTGGCTCTATTTCAAGTGTCACAATTGATATGTCGGATTCTGGTATTGAGACTTTGAAATATGAGGGAATTTTTGATCTACTTTCCTTGACTGGCTCGTTTGAACCAAATAAAGATGGATTAGTATCTGGGAAGCTGACTGTCTCTTTGGCCATAGGTGGCCGGGTTATTCAGGGCCCACTGGCTGGTTCGCTGGTAGCTGCAGGTCCTGTGAAGGTTGTGGTTGCAAGTTTTTGTCCTCCAAAGACGCAGAAGCAGAAGAAAGGCAAGGAGATTGCTGATCATTCCTAA 918 0.439 MASSPTANNNKMDYFKPTRRGSTDIGWWWNSFKDENQKTIVCHFCGHPSTGGITRAKYHQLGIKGREVKPCEKTPEDVKILLKNYFDSKQAAKDACSGPAKGLPMQTLESAPAPNCTKERKKRGRPLQYELGSKAALSPMPVSFAFPMTGEFSASNRGRGLNDFKDDGPSNSIGSHFSHHAFIVNSGEDVASRISLLALDFQAISVLSGSGSISSVTIDMSDSGIETLKYEGIFDLLSLTGSFEPNKDGLVSGKLTVSLAIGGRVIQGPLAGSLVAAGPVKVVVASFCPPKTQKQKKGKEIADHS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1675 305 SUPERFAMILY AF0104/ALDC/Ptd012-like 176 295 - -
Mtr6g1675 305 CDD DUF296 180 287 IPR005175 -
Mtr6g1675 305 ProSiteProfiles PPC domain profile profile. 174 305 IPR005175 -
Mtr6g1675 305 Gene3D - 178 302 - -
Mtr6g1675 305 Pfam Plants and Prokaryotes Conserved (PCC) domain 180 287 IPR005175 -
Mtr6g1675 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 1 91 297 - -
Mtr6g1675 305 MobiDBLite consensus disorder prediction 103 125 - -
Mtr6g1675 305 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 91 297 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1675 Mtr-Chr6 31106470 31115673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1675 110 295 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 38.889 3.07e-31 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1675 - - mtr:MTR_6g060670 612.453