Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1655 ATGCAAATATTCGTCAAGACTCTTACTGGCAAGACCATCACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGGCAAAAATTCAAGACAAGGAAGGAATCCCACCTGACCAGCAGCGTCTGATTTTTGCTGGCAAGCAGCTGGAGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTCCACCCTCCATTTGGTGCTCCGTCTCCGTGGTGGGATGCAAATCTTCGTCAAGACTCTCACTGGAAAGACAATCACCCTTGAGGTGGAGAGCTCTGATACTATTGATAATGTCAAAGCCAAGATTCAGGACAAGGAGGGTATCCCCCCAGACCAGCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCCGATTACAACATCCAAAAAGAGTCAACTCTTCACCTTGTCTTGCGCCTTCGTGGTGGTATGCAGATTTTTGTGAAGACCCTCACCGGAAAAACAATTACTTTGGAGGTAGAGAGCTCAGATACTATTGACAATGTGAAGGCCAAGATACAGGACAAGGAGGATCCCCCAGACCAGCAAAGGTTGATTTTCGCTGGAAAGCAGCTTGAAGATGGCAGGACATTGGCTGATTATAATATCCAGAAGGAATCCACCCTTCATCTTGTTCTTCGTTTGAGGGGAGGTATGCAGATCTTTGTGAAGACTTTGACAGGAAAGACCATTACATTGGAGGTGGAAAGTTCAGACACCATTGATAATGTTAAGGCAAAAATCCAGGACAAGGAAGGAATCCCACCAGATCAACAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGAACCCTTGCTGACTACAACATTCAGAAAGAGTCTACTCTTCACCTTGTTTTACGTCTTCGTGGTGGATTCTAA 915 0.4557 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEDPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1655 304 CDD Ubl_ubiquitin 228 303 - -
Mtr6g1655 304 Gene3D - 77 152 - -
Mtr6g1655 304 Gene3D - 153 227 - -
Mtr6g1655 304 Gene3D - 228 304 - -
Mtr6g1655 304 Gene3D - 1 76 - -
Mtr6g1655 304 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Mtr6g1655 304 PANTHER UBIQUITIN 153 303 - -
Mtr6g1655 304 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Mtr6g1655 304 PANTHER UBIQUITIN 1 186 - -
Mtr6g1655 304 CDD Ubl_ubiquitin 153 227 - -
Mtr6g1655 304 ProSitePatterns Ubiquitin domain signature. 254 279 IPR019954 -
Mtr6g1655 304 PRINTS Ubiquitin signature 11 31 IPR019956 -
Mtr6g1655 304 PRINTS Ubiquitin signature 32 52 IPR019956 -
Mtr6g1655 304 PRINTS Ubiquitin signature 53 74 IPR019956 -
Mtr6g1655 304 SUPERFAMILY Ubiquitin-like 76 152 IPR029071 -
Mtr6g1655 304 CDD Ubl_ubiquitin 77 152 - -
Mtr6g1655 304 SUPERFAMILY Ubiquitin-like 227 303 IPR029071 -
Mtr6g1655 304 CDD Ubl_ubiquitin 1 76 - -
Mtr6g1655 304 ProSiteProfiles Ubiquitin domain profile. 228 303 IPR000626 GO:0005515
Mtr6g1655 304 PANTHER POLYUBIQUITIN 12 77 240 - -
Mtr6g1655 304 PANTHER POLYUBIQUITIN 12 1 186 - -
Mtr6g1655 304 PANTHER UBIQUITIN 77 240 - -
Mtr6g1655 304 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Mtr6g1655 304 SMART ubq_7 153 223 IPR000626 GO:0005515
Mtr6g1655 304 SMART ubq_7 228 299 IPR000626 GO:0005515
Mtr6g1655 304 SMART ubq_7 1 72 IPR000626 GO:0005515
Mtr6g1655 304 SMART ubq_7 77 148 IPR000626 GO:0005515
Mtr6g1655 304 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Mtr6g1655 304 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515
Mtr6g1655 304 ProSiteProfiles Ubiquitin domain profile. 153 227 IPR000626 GO:0005515
Mtr6g1655 304 PANTHER POLYUBIQUITIN 12 153 303 - -
Mtr6g1655 304 SUPERFAMILY Ubiquitin-like 152 227 IPR029071 -
Mtr6g1655 304 Pfam Ubiquitin family 155 225 IPR000626 GO:0005515
Mtr6g1655 304 Pfam Ubiquitin family 79 150 IPR000626 GO:0005515
Mtr6g1655 304 Pfam Ubiquitin family 230 301 IPR000626 GO:0005515
Mtr6g1655 304 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1655 Mtr-Chr6 30640444 30641934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1655 1 77 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 98.701 1.55e-48 156