Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1625 ATGCCTTCATTACCTATCACAAACGACACCGTTTCAATGGAAAGCCCTAAATCAAAATCATCAAAAAAGAAAAAGCTTCTCCAAAACGACGTCGTTTCAGAGGTCGAAGCCGTTTCGGCGAAGAAAAAGGAGAGTTCGAAGAAAAGGAAGAAAAGTTCAGATGATGATGAAGAAACGAAGAGTGATATAAGCTCTGAAGAAGGTTCTAGAAAAGTGAAGAAGGAGAAAAAGAAGAAGAAATCGAAGGTTGAAGATGAAGAAATTGTTGAAGAAGAAGAGGTTGCTGTGAAGAAAGATGATCCGAATGCAGTTTCGAATTTTAGGATTTCGGAACCATTGAGGATGAAATTGAAGGAAAATAAGATTGAAGCTTTGTTTCCGATTCAAGCTATGACTTTTAATACCATTCTTGATGGGTCTGATTTGGTTGGTCGTGCTCGTACTGGACAGGGTAAAACTCTTGCATTTGTGTTGCCCATATTAGAGTCATTGACAAATGGTCCAGCTAAATCAGTTAGAAAGACTGGCTATGGGAGAGTCCCAAGTGTTATCGTGCTTCTACCTACAAGGGAATTGGCCAATCAGGTGTATGCTGACTTTGAACTTTATGGTTCATCCTTGGGATTGTCTGCTTGCGCTGTATATGGTGGAGCCCCATATGGCGCTCAGGAGACCAAACTTAGAAGGGGTGTTGATATTGTTATTGGAACACCAGGGCGTATTAAGGATCATATCGAGAGGGGGAATATTGACCTGAGCCACCTGAAGTTCCGTGTCCTTGACGAGGCAGATGAGATGTTGAGGATGGGTTTTGTTGATGATGTTGAACTCATTCTAGGCAAGGTACAAGATGTTACCAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAAGCTGGGTTAAGCAAATTTCTACGAAATTTCTGAAATCAGATAAGAAAACTGCAGATCTTGTTGGAAATGAGAAAATGAAAGCCAGCACCAATGTTAGGCATATTATCCTTCCATGTAGTAGTACTGCCAGGGCACAGCTTATCCCTGATATTATTCGCTGTTATAGCAGTGGAGGCCGGACAATTATATTTGCGGAGAAAAAGGAGTCTGCTTCTGAGCTTGCTGGATTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGTGAGATTACGTTGAAAGGCTTTAGATCTGGGAAATTCATGACATTGGTGGCCACCAATGTTGCGGCCAGAGGTCTTGACATCAATGATGTTCAGTTGATTATCCAGTGTGAGCCTCCGCGGGATGTAGAAGCATATATACATCGATCTGGGCGGACAGGAAGAGCTGGCAACACTGGAGTTGCTGTGATGCTTTATGATCCCAGAAGGTCGAATATAGCTAAAATAGAAAGAGAAGCAGGTATTAAATTTGAACATGTATCTGCTCCTCAGCCTGATGAAATTGCCAAAGCAATGGGTGGGGATGCTGCTGAAATGATTACCGATGTGTCTGACAGTGTGATTCCTGCATTCAAATCTGCTGCTGAGCAACTTCTGAACAACTCTGGTTTATCAGCTGTTGAGTTACTCGCAAAAGCTCTTGCAAAGGCGGTTGGTTATACTGAGGTAAAGAACAGATCCCTACTGACTTCGATGGAGGGTTATGTTACATTAATTCTTGAGGGAGGAAAGCCTATGTTCACCCCATCCTTTGCATTTGGAACCTTGAGGAGATTCGTACCTGAGGATAAGGTCGATGCAGTGCAAGGTCTTGCTCTTACTGCAGATGGACTGGGTGCTGTTTTTGATGTACCTGCCAAGGACTTGGATATATTTCTCTCAAGTCAAAAGAATGCCGTTAATGTAAGCCTGAAGGTTGCTAAAGAATTGCCTAGTTTGCAACAAAGAGAGGAATCAAGTGGGCGCAGATTTGGCGGTGGTCGTGGATTTTCAGGTGGAAGAGGCGGAGGAGGTTATAGGTTTGGCGGAAGAGGTGGTGGTGGTGGTGGTGGAAGAGGTTACGGTGGAGGCAGAGGAGGGGGAAACAGATGGTAA 2046 0.4374 MPSLPITNDTVSMESPKSKSSKKKKLLQNDVVSEVEAVSAKKKESSKKRKKSSDDDEETKSDISSEEGSRKVKKEKKKKKSKVEDEEIVEEEEVAVKKDDPNAVSNFRISEPLRMKLKENKIEALFPIQAMTFNTILDGSDLVGRARTGQGKTLAFVLPILESLTNGPAKSVRKTGYGRVPSVIVLLPTRELANQVYADFELYGSSLGLSACAVYGGAPYGAQETKLRRGVDIVIGTPGRIKDHIERGNIDLSHLKFRVLDEADEMLRMGFVDDVELILGKVQDVTKVQTLLFSATLPSWVKQISTKFLKSDKKTADLVGNEKMKASTNVRHIILPCSSTARAQLIPDIIRCYSSGGRTIIFAEKKESASELAGLLPGARALHGDIQQSQREITLKGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNTGVAVMLYDPRRSNIAKIEREAGIKFEHVSAPQPDEIAKAMGGDAAEMITDVSDSVIPAFKSAAEQLLNNSGLSAVELLAKALAKAVGYTEVKNRSLLTSMEGYVTLILEGGKPMFTPSFAFGTLRRFVPEDKVDAVQGLALTADGLGAVFDVPAKDLDIFLSSQKNAVNVSLKVAKELPSLQQREESSGRRFGGGRGFSGGRGGGGYRFGGRGGGGGGGRGYGGGRGGGNRW* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1625 681 SMART helicmild6 370 447 IPR001650 -
Mtr6g1625 681 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 315 IPR014001 -
Mtr6g1625 681 SUPERFAMILY RNA-binding domain, RBD 540 623 IPR035979 GO:0003676
Mtr6g1625 681 MobiDBLite consensus disorder prediction 1 15 - -
Mtr6g1625 681 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Mtr6g1625 681 CDD GUCT_RH7_like 543 628 - -
Mtr6g1625 681 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 7 20 665 - -
Mtr6g1625 681 Gene3D - 14 315 IPR027417 -
Mtr6g1625 681 SMART ultradead3 121 333 IPR014001 -
Mtr6g1625 681 MobiDBLite consensus disorder prediction 16 72 - -
Mtr6g1625 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 57 282 IPR027417 -
Mtr6g1625 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 460 IPR027417 -
Mtr6g1625 681 MobiDBLite consensus disorder prediction 1 88 - -
Mtr6g1625 681 Gene3D - 326 549 IPR027417 -
Mtr6g1625 681 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 20 665 - -
Mtr6g1625 681 Pfam DEAD/DEAH box helicase 126 303 IPR011545 GO:0003676|GO:0005524
Mtr6g1625 681 Gene3D - 550 626 - -
Mtr6g1625 681 CDD DEADc 113 310 - -
Mtr6g1625 681 Pfam GUCT (NUC152) domain 536 631 IPR012562 GO:0003723|GO:0004386|GO:0005524
Mtr6g1625 681 Pfam Helicase conserved C-terminal domain 348 447 IPR001650 -
Mtr6g1625 681 CDD SF2_C_DEAD 330 456 - -
Mtr6g1625 681 MobiDBLite consensus disorder prediction 629 681 - -
Mtr6g1625 681 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 344 486 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1625 Mtr-Chr6 29446301 29452229 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1625 139 483 Eukaryotic Initiation Factors Gene Family AT1G72730 30.571 2.49e-41 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1625 K16911 - gmx:100805921 874.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1625 6 29446301 29452229 Mtr6g1625 6 29446301 29452229 ECH