Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1620 ATGGCTTACTCTACAATTCACCTTTTATCTATCCTTATCCTTGTTAGATTCCTCTCTTCTGCAACAATGGCACAAGACTCTCCATTATTTCTGAATACAATTTGTCCCATCAACGTTACCAAACCAAGCAGCACCTTCCAAAGCAATCTCATAAACCTCTTCAATTCATTGTCATCAAAAGCCATAGGCAACACCAAATTCTACAACACCACAGTCACTAGTATAAATTCGTCCGTATCCGTCTATGGATTGTTCATGTGTAGAGGTGACATACCCTCTCATCTATGTCATGACTGCATAGTTAAGGCAACCAATCAGCTATCCTCAGAGTGCTCTTTGTCCAAACAAGCTGTGATTTGGTACGGCGAGTGCATGGTTCGATTCTCTGACAACTCTTTCTTTTCCACGATCGATATGATGCCAGGTTTTCACTGGTGCAATACCGCTGAAATCTTAAACACGAAAAGCTTCGTGTCTTTATTGTTTTCAACCATGAATCGAACTGCAGACGAAGCAGCAAGTCCGCTTAGTGGTGACAAGAACAAGTTTGCAACAAAAGAAGCACGAGTTTCGGAAAATCAGACCCTTTACAGTCTAGCTCAGTGCACGCTGGATTTGTCGCCTAATGATTGCAGAACCTGTCTCACTAGTGCTATTGAGACACTTTCACAAAGCTGTGTTGGAAAGGTTGGTGGGAGATTTCTTTATCCTAGCTGTAATGTTAGGTATGAATTATATCCATTTTATAGGTCTACTTATGTTCTTTCCCCAAATGAGCTTGCTCCTCAAACAAATGATTCCATACAAGATTCTAAAATACTTTCAGAAGATCCATTTTATCTTTCCTATAATTGCTCAAGAAATTACAATACAATCACTGACAAAAACATCAAACTACTTCTGTCTTATTTGTTGTCGAACGCCACCATCGGCAAAAAATTTTATTGGCTTAAAGTGGAAGAAATTGCGTATGGTCTCTTCATGTGTCGAGGTGATCTTCCGCCTCGCCTTTGTGTTCAATGCGTCAAAAATGCAACGGAACAACTATACTCAAAGTGTCATTCCTTCCCAGAGGGTATAATTTGGTACAGCCATTGCCTGCTTCGCTATTCGAATAGGTATTTCATTCACAGCATTGAAACAGGGCCTATGTTCCGCGATATAAATATTACAAATGGTTCCATCCCGGACCAAAACTTGTTCACAAATGCATTATCAAATCAATTATCTGAACTTGTCAATGTTACGGGGAACAACGAGGAAAAATATGCGAAAAATTCATTAATTTTGAATGATAAACAAACTTTGTATACTCTTGAACAATGTACAAAAGATTTGTCTAGTCAGGATTGCAATTCATGTCTAAATGATATGATCAGTAGAGAAATTCCATGGTCATTTTTGGGAAGTGTTGGAGGAAGAATCATATATCCTAGCTGCAATCTGAGGTTTGAATTGTTCAAATTTTATATGGACGGCGACGAAGCTCTACCGCCTGGAAGTCCTACAACATTTGCAAGACATACAGAGAAAAGGACAATTATATCCATTGTTGTCCCTACTATTATTTTGGTGATGCTCTTCACTATTGGCTACTATTTGATAAAGAGAAGGAGAAGAAAGAGTCGTAGGACCATTCTTCGAGAAAATTTTGGTGAAGAAAGTGCCACTTTAGAGCCACTGCAATTCGATTGGATGGTAATTGAAGCAGCAACAAACAACTTTTCTAAGGACAATTACATTGGCAAAGGAGGGTTTGGAGAGGTTTTCAAGGCTATCCTTTCTGATGGACGAGAAGTAGCTATAAAGAGGCTTTCAAGAAGTTCTAAGCAAGGTGTAGAGGAGTTCAAGAATGAAATTTTATTGATAGCCAAGCTTCAACATAGAAATCTAGTGACTTTTATTGGCTTTTGTCTTGAAGGACATGAGAAGATACTTATTTATGAATATGTTTCCAACAAGAGTCTTGATTACTTTTTATTTGATTCTCATCAGCAAAAGTTGTTAACTTGGGTTGAACGCTTTAACATCATTGGAGGAATTGCTCGAGGAATTCTTTATTTGCATGAGCATTCTCGACTCAAAGTTATACATCGCGATCTCAAACCTAGTAATATTCTATTAGATGAAAATATGATTCCTAAAATTTCAGATTTTGGTTTGGCACGGATGGTCGAAATAAGTCAAGAGGAAGGAAGTACAAATAGAATTGTTGGAACATATGGTTATATGTCTCCAGAATATGCAATGTTTGGACAATTTTCTGAAAAATCAGATGTTTATAGTTTTGGAGTCATGATCCTAGAGATTGTAGCTGGAAAGAAGAATATAAGTTCATATGAACCACAACATGTTGCTAATAGCCTCTTGAATTCTGTGTGGAGACAGTGGATGGATAAAACACCTTTAAATATATTGGACCCAAATATTAAAGGAGATTTTTCTAAAACTGAAGTCATTAAGTGCATTCAGATTGGTCTATTATGTGTTCAAAATGATCCAGAGGCTAGACCTTCAATCTTGACAATTGCTTCTTATCTTAGCAGTCATTCAATTGAGTTACCAACTCCACAACAACCTGCATTTTTCCTGCAAGGTAGAACCTACAATGATAGTTCTGCCCTATTCTCTAGCAATGGAATGCCTTCAAGTACATTTTTTCCTCGGTAG 2670 0.376 MAYSTIHLLSILILVRFLSSATMAQDSPLFLNTICPINVTKPSSTFQSNLINLFNSLSSKAIGNTKFYNTTVTSINSSVSVYGLFMCRGDIPSHLCHDCIVKATNQLSSECSLSKQAVIWYGECMVRFSDNSFFSTIDMMPGFHWCNTAEILNTKSFVSLLFSTMNRTADEAASPLSGDKNKFATKEARVSENQTLYSLAQCTLDLSPNDCRTCLTSAIETLSQSCVGKVGGRFLYPSCNVRYELYPFYRSTYVLSPNELAPQTNDSIQDSKILSEDPFYLSYNCSRNYNTITDKNIKLLLSYLLSNATIGKKFYWLKVEEIAYGLFMCRGDLPPRLCVQCVKNATEQLYSKCHSFPEGIIWYSHCLLRYSNRYFIHSIETGPMFRDINITNGSIPDQNLFTNALSNQLSELVNVTGNNEEKYAKNSLILNDKQTLYTLEQCTKDLSSQDCNSCLNDMISREIPWSFLGSVGGRIIYPSCNLRFELFKFYMDGDEALPPGSPTTFARHTEKRTIISIVVPTIILVMLFTIGYYLIKRRRRKSRRTILRENFGEESATLEPLQFDWMVIEAATNNFSKDNYIGKGGFGEVFKAILSDGREVAIKRLSRSSKQGVEEFKNEILLIAKLQHRNLVTFIGFCLEGHEKILIYEYVSNKSLDYFLFDSHQQKLLTWVERFNIIGGIARGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARMVEISQEEGSTNRIVGTYGYMSPEYAMFGQFSEKSDVYSFGVMILEIVAGKKNISSYEPQHVANSLLNSVWRQWMDKTPLNILDPNIKGDFSKTEVIKCIQIGLLCVQNDPEARPSILTIASYLSSHSIELPTPQQPAFFLQGRTYNDSSALFSSNGMPSSTFFPR* 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1620 889 Pfam Protein kinase domain 576 843 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1620 889 ProSitePatterns Serine/Threonine protein kinases active-site signature. 696 708 IPR008271 GO:0004672|GO:0006468
Mtr6g1620 889 SUPERFAMILY Protein kinase-like (PK-like) 558 875 IPR011009 -
Mtr6g1620 889 ProSiteProfiles Gnk2-homologous domain profile. 27 133 IPR002902 -
Mtr6g1620 889 Gene3D Transferase(Phosphotransferase) domain 1 651 856 - -
Mtr6g1620 889 Pfam Salt stress response/antifungal 291 372 IPR002902 -
Mtr6g1620 889 Pfam Salt stress response/antifungal 396 485 IPR002902 -
Mtr6g1620 889 Pfam Salt stress response/antifungal 154 246 IPR002902 -
Mtr6g1620 889 Pfam Salt stress response/antifungal 41 130 IPR002902 -
Mtr6g1620 889 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 270 492 - -
Mtr6g1620 889 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 16 257 - -
Mtr6g1620 889 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 504 870 - -
Mtr6g1620 889 ProSitePatterns Protein kinases ATP-binding region signature. 581 603 IPR017441 GO:0005524
Mtr6g1620 889 Gene3D - 280 375 IPR038408 -
Mtr6g1620 889 Gene3D - 141 248 IPR038408 -
Mtr6g1620 889 Gene3D - 384 489 IPR038408 -
Mtr6g1620 889 Gene3D - 29 133 IPR038408 -
Mtr6g1620 889 Gene3D Phosphorylase Kinase; domain 1 536 650 - -
Mtr6g1620 889 ProSiteProfiles Gnk2-homologous domain profile. 275 375 IPR002902 -
Mtr6g1620 889 ProSiteProfiles Gnk2-homologous domain profile. 139 248 IPR002902 -
Mtr6g1620 889 ProSiteProfiles Protein kinase domain profile. 575 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1620 889 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 504 870 - -
Mtr6g1620 889 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 257 - -
Mtr6g1620 889 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 270 492 - -
Mtr6g1620 889 SMART serkin_6 575 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1620 889 ProSiteProfiles Gnk2-homologous domain profile. 383 489 IPR002902 -
Mtr6g1620 889 CDD STKc_IRAK 581 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1620 Mtr-Chr6 29395082 29400644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1620 272 872 Receptor kinase-like Gene Family AT4G05200 43.471 8.41e-167 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr6g1620 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1620 - - mtr:MTR_6g055960 1212.98