Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1616 ATGGATTTGATATCAAATTCATCTGAGAGTGGACAACTGAGTGTTGAAACTTCTTCAATGATTCATGCTGATAGTTCTCAATGTTACTCCCCTAGCAATGAAGAATCATGGAAGTCTTTAGTCTTTCAATCTATTAAAGAGATTGAAGATTTTTATGGTAATTATGCATATAACATTGGATTTTCTATTAGAACTATGTTGAAGTCGAAGAATAATTCACAAAATAAGAAATCAGATAAGGTACATTATGTGCGTTATGTTTGTAACAAACAAGGTTTCAAGAAGGGAAGTTTGCTTAATCCTAACAACAGGCCAACATCAGACAGTCCACTGGTTATTGAGTTTGTGAAAGTGAAAGAAAAACCTGAGGAAAGGGTCGGTTGTAAAGCTGGAATATGTTTGAAGCTGGATGAAGTTTTGAATGTGTATAAGATTTATAGATGGGATGTGGCTCACTGTCATCCATTACATAAACCAGAGCATTTGTGTTACCTGGGATCATTTAGAGAAGTAAATGAAGTTCAAGGACAACTAGCTCTAATAAATTCTAAAGCTGGAATGTCGATGAGAATGTCTTATGAAGTTCTTGGTCAAGGAGTTGGAGGTACGGAGAATCTTCCTTTTCGGTTTTCAGACTTAAAGAACTATCTAATGACAATTCGTCAAAAGGAGATGGTGGTTGGTGAAGCAACTGTAATTCAAGAATTCTTTAGAAATGAAGCTCTCTCGAAACCATCTTTTTACTATGATATCCAAGTTGATGCTGCAGAAGACATAGCTAGCATTTTTTGGGCAGATGGAATTATGCAACTAGATTATTCTCTATTTGGTGATGTCATCAGTTTTGATACAACTTACCGAACAAACAATCAATATCGACCATTAGCTGCCTTTATTGGTTTTGACAATCATCGCAATAGTGTTTTATTTGGTGCTGCGCTATTGTACGATGAGACAGCAGCTAGTTTTGATTGGTTGTTTACAACATTCTTGAAGTGTGTTTTTCATGGGCTTTGTTCATGGCACATGGCAGAGAATGCAAAGAAAAATCTTGGCTCTCGTGCAAACAATGCATTTTTCGATGAGTTAACTAATTTGGTTTCAAATGTAGACGATGAATCAGATTTCGACTATAATTGGGATCAGATGATGAAAAATTGTTTTAATGGAAGGCCTACTTCAGACTTTAGGTGGCTTCTCCAAACTTATAGAAATCGTATGCATTGGTCTTCAGCTTGGGTCAAGTCACATTTTACAGTTGGTCTGAAAACAACTCAGTTAAGTGAGTCTTTCAATTCTTTTCTTCGTGGATTTCTGCAGCCAGACCATTCACTTGTTCGATTCTTTAGTCATTTCAACATTATGGTTCAGAGAATGAGAGATAATCATGCTGAGTTGGACTTCAAGGCTGCAAACACTAGAACAAAAAATAATTATCCCAATAGTCAGCTGATGCGGTCCGTTGTAAACAAGTACACACCAGCTTGCTTTGCATTTATTCACAGGCAGTATGACCTTTCCTTCAAATACTATCATGAGGAGGACACAACAAAAGGGTCTGCCTTTAACAAGTTTTTCAAAGTTTTCACAATTGAAAAGGTTGATGATAATTATGATGTTGATAATGATAATGACGGGACTTCCAATGTTGATGTTTTGGATGCAGAACTTCAAGAAAACCTTTTCCCAAGTTTTGAAGATCATGATCGACTTGATGAAAGAGTTGTCACAGTTAACATTAGAAGCAAAAGTTTTAGTTGTTCATATCGTATGTTTGAGAACAGGGGCTTTTTATGTCGACATGTTTTGAAGATCTTGGAGTTCTTAGGTGGTTATGTGCAATATCATTTTTTGAAGACAATACCTGGACAATATATTTTAAAGCGTTGGACTAGAGATGTGCGTCCGTCTGTTGATAAGCTGAAATCTACCATCAATGTTGGCACTGAAGACACCACTCAAGCACAACGATATCAACAAATTTGTGCTGTTACCGTTCAGCTTTCTACACGTTTTTGTGCAGATCCGGAGGCATCTGAAATTTTTCTCGACGGTGTTCTTGAAGCTGGGAAAAAGGCAGAGGAGTTGCTTCTTTCTAAAGGTATTCGTACAGACCCATCTTCCTTGACGTCATCATCCAAGTCTTCAAAAGGAGCTGCTGTCGGTGAACCATCTGCTGGGGTGAAGTCCACTGCACCAAAGTTCAAAAAAGGACCAAATCCAATTAAGTCAAAGAAGCGACTTAAAAGTGATTATGAAAAAGCTAGAGAAAGGTTGTTACAAAACCATTAG 2292 0.3713 MDLISNSSESGQLSVETSSMIHADSSQCYSPSNEESWKSLVFQSIKEIEDFYGNYAYNIGFSIRTMLKSKNNSQNKKSDKVHYVRYVCNKQGFKKGSLLNPNNRPTSDSPLVIEFVKVKEKPEERVGCKAGICLKLDEVLNVYKIYRWDVAHCHPLHKPEHLCYLGSFREVNEVQGQLALINSKAGMSMRMSYEVLGQGVGGTENLPFRFSDLKNYLMTIRQKEMVVGEATVIQEFFRNEALSKPSFYYDIQVDAAEDIASIFWADGIMQLDYSLFGDVISFDTTYRTNNQYRPLAAFIGFDNHRNSVLFGAALLYDETAASFDWLFTTFLKCVFHGLCSWHMAENAKKNLGSRANNAFFDELTNLVSNVDDESDFDYNWDQMMKNCFNGRPTSDFRWLLQTYRNRMHWSSAWVKSHFTVGLKTTQLSESFNSFLRGFLQPDHSLVRFFSHFNIMVQRMRDNHAELDFKAANTRTKNNYPNSQLMRSVVNKYTPACFAFIHRQYDLSFKYYHEEDTTKGSAFNKFFKVFTIEKVDDNYDVDNDNDGTSNVDVLDAELQENLFPSFEDHDRLDERVVTVNIRSKSFSCSYRMFENRGFLCRHVLKILEFLGGYVQYHFLKTIPGQYILKRWTRDVRPSVDKLKSTINVGTEDTTQAQRYQQICAVTVQLSTRFCADPEASEIFLDGVLEAGKKAEELLLSKGIRTDPSSLTSSSKSSKGAAVGEPSAGVKSTAPKFKKGPNPIKSKKRLKSDYEKARERLLQNH* 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1616 763 Pfam MULE transposase domain 279 333 IPR018289 -
Mtr6g1616 763 MobiDBLite consensus disorder prediction 705 763 - -
Mtr6g1616 763 Pfam FAR1 DNA-binding domain 50 157 IPR004330 -
Mtr6g1616 763 PANTHER OS03G0181600 PROTEIN 42 331 - -
Mtr6g1616 763 PANTHER OS03G0181600 PROTEIN 335 682 - -
Mtr6g1616 763 Coils Coil 742 762 - -
Mtr6g1616 763 MobiDBLite consensus disorder prediction 705 719 - -
Mtr6g1616 763 MobiDBLite consensus disorder prediction 744 763 - -
Mtr6g1616 763 ProSiteProfiles Zinc finger SWIM-type profile. 576 610 IPR007527 GO:0008270
Mtr6g1616 763 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 42 331 IPR031052 GO:0006355
Mtr6g1616 763 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 335 682 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1616 Mtr-Chr6 29324220 29327190 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr6g1616 FAR1 1.3e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1616 - - mtr:MTR_0558s0020 565.459