Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1613 ATGGCTAATTTGGCTAATTTCCATAAAATTCATTACCTCTTCACCCTTATTATTTTCCTCACTTTTTTCACATCTACTAATTCATGGGATGACCCTTTTTTCCTATACCAATATTGCTCAAGCAACCGAACATCAGCCTATACTTCATTCCAATTTGATCTCACCACCCTCCTCTCTTCCTTATCATCCAAAGCCACAAAAAACACAAACACACAATTCTACAACACAACATTCATTGGAAACAATCCTTCAGACACAATCTATGGCATGTTCTTATGTAGGGATGATGTTCCCTCTCAACTTTGTCAACAATGTATACTAAATGCAACACAAAGACTTTCCTTGCAATGTTCTTTGTCTAAAGAAGGTATTGTTTGGTACAATGAATGTATGGTTTGGTATTCGACAACCTTTATTTTCTCCACGGTTGCAAGGACAACACCTACTTTTAACTTGTTGAATACTGACAAAGTCGCAAACCCGAAAAGTTTCATGAGTTTATTGTTTTCTACAATGAACAAAACTGCAGATGAAGCAGCTTTTGGTGACAAAAAATTTGCATCAAATGCAATAACTATATCGAAATTTCAAACCCTTTATTGTTTAGTTCAATGCACACCAAATTTGTCACCACATGAATGTAGAAGTTGTCTAAGTGGATTGATAGAGGAACTTCCAGTGTGTTGTGAAGGAAGAGTTGGAGGAAGAGTTCTAAATCCAAGTTGTAATATTAGGTATGAATTCTACCCTTTTTATATCTCTTCTAATGGTTCATCAAATCCTTCATCACAACAAATTATACTTCCCCAAACAAAAAATTTAGATGCTGATTCAACTATTTCAGAACACCCTTTTTACCTTTCACACAATTGTTCTAGTAACAAAACCTTCACTTTTAGTAACACTTTCAAGAAACACCTTACAACCCTTTTTTCCTACATGTCTTCTAATGCCACTAAAAGTCTATTTCATAAAGCTGAAGTTGAAAATACAACTTTTGGACTCTTCATGTGCCGTGGCGATGTTCCCTTTTCGTTATGTGAGCAGTGTGTGAAAAATGCAACACAAAGAATAAGCAAAGAGTGTAACATTTTTCAAGAGGGTATAATTTGGTATACTCAATGCATGATTCGGTATTCGAATTGGAATTTCTTCTCTATAGTGGACAAAACTCATGTCTATTATGAGATGAATATTACTAGTGATTCTAGTCCCAACAAGGAGAGAAACTTGTTCAATTTTGTTATATCAACTACCTTATCAAATGTGGCAATTGTGGCAGGAGATAGTGATGAAAGATTTGGAACAAAATCACTGAAAGTGAATGATTTGCAAACACTTTATACACTTGGTCAATGTACACAAGATTTGTCAAGTGATGATTGCAAAGGTTGTTTGGGAGATGTTATTGGAAATAGAATTCCTTGGCCTTATTTGGGAAGTGTTGGTGGAAGAGTTTTATATCCTAGTTGTAATTTGAGGTTTGAATTGTTCCAATTTTATAGGGACAATGAGACAGTTCCTAAACCAATAATTAAACGTTATTCATCAGGAAAAAGAAGAAAATTGCCGCAAACAATTACCGTGATTGTTGTGGTCACATTTATTCCAGTGATACTCTTGTTTGTTGGATGCTATTTGCTAAAGAGAAGAGCAAGAAAGAGTTTTAGAACTATTCTCAGAGAAAACTTTGGTCATGAAAGTGCAATTTTAGAGCCATTGCAATTTGAATTAGCTGTAATTGAAGAAGCAACCAACAACTTTTCAAGTGAAAATTTCATTGGCAAAGGTGGATTTGGAGAAGTTTACAAGGGCATTCTTTCGGATGGACGACAAATAGCTGTAAAAAGACTCTCAAGAACCTCTACGCAAGGTGCAAAAGAGTTCAAGAATGAGGTTTTGTTGATCGCCAAGCTTCAACATCGAAATCTAGTCACGTTCATTGGTTTTTGCCTCGAAGAACAAGAGAAAATACTTATTTATGAATATGTGCCAAACAAGGGACTTGATCAGTTTTTATTTGATTTTCAACGAGCAAAGTTCTTAAGTTGGTCTCAACGTTACAGTATTATAAGGGGAATTGCTCAAGGAATTCTCTATTTGCATGAACATTCTCGACTCAAAGTTATTCATCGTGACCTCAAACCTAGTAATATTTTATTAGATGAGAACATGATTCCAAAAATATCAGATTTTGGTCTTGCTAGAATTGTAGAACTAAACCAGGACAAAGGAAGTACAAATAGGATCGTGGGAACATTAGGTTATATGTCTCCAGAATATGCGATGCTCGGGCAATTTTCTGAGAAATCTGATGTTTATAGTTTTGGAGTCATGGTTTTAGAAATTATTACCGGAAAGAAGAATATTAGGTCTTATGAATCACATGTTGGTGATGGCCTCCTGAGTTATGTTTGGAAACAATGGAGGGATGAAATACCATTAAGCATATTAGACCCAAATATTAAAGGAAGATATTCTGAAATTGAAGTAATTAAATGCATTCAGATTGGTTTATTATGCGTTCAGCAGTTCCCAGATGCAAGACCTACCATTGTTTCAATTGTTTCATATCTTACCAATGACTTCATTGAATTGCCAACCCCACAAGAATCTGCAATTGTGTTCCATCGTCAAATGGATGCAAAAGAGATTCCACAAGATTCAAGTTCAAGTCGGTCGATAAATACTTCCACACCTTTGACGATCAACGACTTTTCTATAACCGAAGTTCTTCCTCGATAG 2745 0.3526 MANLANFHKIHYLFTLIIFLTFFTSTNSWDDPFFLYQYCSSNRTSAYTSFQFDLTTLLSSLSSKATKNTNTQFYNTTFIGNNPSDTIYGMFLCRDDVPSQLCQQCILNATQRLSLQCSLSKEGIVWYNECMVWYSTTFIFSTVARTTPTFNLLNTDKVANPKSFMSLLFSTMNKTADEAAFGDKKFASNAITISKFQTLYCLVQCTPNLSPHECRSCLSGLIEELPVCCEGRVGGRVLNPSCNIRYEFYPFYISSNGSSNPSSQQIILPQTKNLDADSTISEHPFYLSHNCSSNKTFTFSNTFKKHLTTLFSYMSSNATKSLFHKAEVENTTFGLFMCRGDVPFSLCEQCVKNATQRISKECNIFQEGIIWYTQCMIRYSNWNFFSIVDKTHVYYEMNITSDSSPNKERNLFNFVISTTLSNVAIVAGDSDERFGTKSLKVNDLQTLYTLGQCTQDLSSDDCKGCLGDVIGNRIPWPYLGSVGGRVLYPSCNLRFELFQFYRDNETVPKPIIKRYSSGKRRKLPQTITVIVVVTFIPVILLFVGCYLLKRRARKSFRTILRENFGHESAILEPLQFELAVIEEATNNFSSENFIGKGGFGEVYKGILSDGRQIAVKRLSRTSTQGAKEFKNEVLLIAKLQHRNLVTFIGFCLEEQEKILIYEYVPNKGLDQFLFDFQRAKFLSWSQRYSIIRGIAQGILYLHEHSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVELNQDKGSTNRIVGTLGYMSPEYAMLGQFSEKSDVYSFGVMVLEIITGKKNIRSYESHVGDGLLSYVWKQWRDEIPLSILDPNIKGRYSEIEVIKCIQIGLLCVQQFPDARPTIVSIVSYLTNDFIELPTPQESAIVFHRQMDAKEIPQDSSSSRSINTSTPLTINDFSITEVLPR* 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1613 914 Pfam Salt stress response/antifungal 39 136 IPR002902 -
Mtr6g1613 914 Pfam Salt stress response/antifungal 291 381 IPR002902 -
Mtr6g1613 914 Pfam Salt stress response/antifungal 162 248 IPR002902 -
Mtr6g1613 914 Pfam Salt stress response/antifungal 407 496 IPR002902 -
Mtr6g1613 914 Gene3D - 285 384 IPR038408 -
Mtr6g1613 914 Gene3D - 391 500 IPR038408 -
Mtr6g1613 914 Gene3D - 146 251 IPR038408 -
Mtr6g1613 914 Gene3D - 31 138 IPR038408 -
Mtr6g1613 914 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 276 506 - -
Mtr6g1613 914 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 20 261 - -
Mtr6g1613 914 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 516 904 - -
Mtr6g1613 914 ProSiteProfiles Protein kinase domain profile. 588 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1613 914 Pfam Protein kinase domain 590 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1613 914 ProSiteProfiles Gnk2-homologous domain profile. 146 251 IPR002902 -
Mtr6g1613 914 CDD STKc_IRAK 594 861 - -
Mtr6g1613 914 SUPERFAMILY Protein kinase-like (PK-like) 572 895 IPR011009 -
Mtr6g1613 914 ProSiteProfiles Gnk2-homologous domain profile. 394 500 IPR002902 -
Mtr6g1613 914 ProSiteProfiles Gnk2-homologous domain profile. 285 384 IPR002902 -
Mtr6g1613 914 SMART serkin_6 588 864 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1613 914 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
Mtr6g1613 914 Gene3D Transferase(Phosphotransferase) domain 1 664 867 - -
Mtr6g1613 914 Gene3D Phosphorylase Kinase; domain 1 552 663 - -
Mtr6g1613 914 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 20 261 - -
Mtr6g1613 914 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 516 904 - -
Mtr6g1613 914 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 276 506 - -
Mtr6g1613 914 ProSiteProfiles Gnk2-homologous domain profile. 32 139 IPR002902 -
Mtr6g1613 914 ProSitePatterns Protein kinases ATP-binding region signature. 594 616 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1613 Mtr-Chr6 29237554 29241234 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1613 279 914 Receptor kinase-like Gene Family AT4G05200 43.722 1.98e-177 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr6g1613 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1613 - - gmx:100806048 1220.3