Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1610 ATGGCTTACTCTAAAATTCTCTTTTTCTTAATCCTTATTCGATTCCTTTGTTTTGCAACTATCAAGGCACAAGACTCTACTTTTCTGTATTCCATTTGTTCCTCCAATCGTACCACAACCAATAGCACCTACCAAATCAATACCAGGACACTCCTCTCTTCTTTATCATCAAAAGCCGTCGGCAACACCGAATTCTACAACACCACAGTCACTAGTATAAACCCCTCTGATTCTGTCTATGGATTGTTCATGTGCAGAGGTGATGTACTATCTCAGTTCTGTCAAAAATGCATAGTTAATGCAACAGAAAAACTGTCCTCAGACTCGGATTGCCATTTATCCAAACGAGCTGTCATTTGGTACGAGGAGTGCATGGTTCGATACTCCAACACCTCTTTCTTTTCCACTGTTTCTACACGTCCTGGTGTTTTTATAATGAACAGCAGTCTCAATGTCTCAAACACAGAAAGCTTCATGCCTTTATTGTTTTCGACGATGAATAAAACTGCAGAGGAAGCAGCAGGTCCACTTACTGCTGACAACAAGAAATTTGCCACAAAAGAAGCAAAGATTTCTGAATCTCAGACCCTTTACTGCCTAGCTCAGTGCACGCCGGACTTGTCACCCGGTGATTGCAGAACCTGTCTTAATAGTGCTATTGAGGAACTTCCTAGCTGTTGTGATGGAAAGGTGGGTGCGAGAGTTGTTTTTCCTAGCTGTAATATTAGGTATGAACTATATCCTTTTTATAGGTCTATTAATGCTCCTTCACCAAATGAGCTTGTTCCTCAAACAAATCATTCAACCCAAGATTCTAGATTTTCACAAGATCCATTTTATCTTTCCTATAATTGCTCAAGAAACCACAGTAAAATCACTAACAAAAACTTCAAATTACTTCTCTCTTATTTGTCCTCCAACGCCACAAATGGCGGAAATTTCCAAAAAGTAAAAGTGGAAGAAATGGTGTACGGCCTCTTCATGTGTCGAGGTGACCTTCCCGTTCACCTCTGCGGTCAATGTGTTAAAAATGCAACGGATCAAATATACTCAAAGTGTCTTTCATGTCCTAAGGGCATAATTTGGTACAGCCACTGCTTGGTTCGCTATTCAGATCAAAAAATCCTCTCTAACATTGAAACAAGTCCTATGTATAGAGATATAAATATCACTGATTACACCACAAACCAAAACTGGTTCACTAGTACCTTATCGAATCAGTTATCTCAACTTGCGAATGATACAGGGGACAGTGATGAAAGATATAAGACTAATTCATTAAAACTGAATGATGTACAAACCTTGTATAGTCTTGGACAATGTACGCGAGATTTGTCTAGTGAGGGTTGCGCTACTTGTCTAAATAATGTGATCACTACATCAATTCCATGGTCAAATTTCGGTAGTGTTGGGGGAAGAATTATCTATCCTAGCTGCAATCTGAGGTTTGAATTGTTCCCTTTTTACATGGAGGGTGACGAAGCTCAGCCACCTGGGAGTCCACCTTTACCACGAAATGCAGACAAACGGAAAATTGTGTTCATTGTTGTCCCTACAATTATTTCGGTGATGTTATTTTCTATTAGCTACTATTGGCTTAAGAAAAGGGGAAGAAAGAGTCGTAGGACTATTCTTCGAGAAAATTTTGGTGAAGAAAGTGCGACTTTAGAACCACTGCAATTCGATTGGGTGGTAATTGAAGCAGCAACCAACAACTTTTCTAAGGACAATTACATTGGCAAAGGCGGGTTTGGAGAGGTTTACAAGGGTATCCTTCTTGATGGACGAGAAGTGGCTATAAAAAGGCTTTCAAAAAGTTCAAATCAAGGTGTAGAAGAGTTCAAGAATGAAGTTTTATTGATAGCCAAGCTTCAACATAGAAATCTAGTGGCTTTTGTTGGTTTTTGCCTTGAAGAACAAGAGAAAATACTTATTTATGAATTTGTGCCCAACAAGAGTCTTGATTACTTTCTATTTGATTCTCAACGGCAAAAGTTGTTAACTTGGGTTGAACGCTTCAACATCATAGGAGGTATTGTTTGAGGGATTCTTTATTTGCATGAAAATTCTCGACTCAAAGTTATACATCGGGATCTCAAACCTAGCAATATTCTATTAGATGAAAATATGATTCCTAAAATTTCTGATTTTGGTTTGGCTCGAATTGTTGAAATAAGTCAAGACGAGGGAAGTACAAATAGAATAGTTGGAACATTTGGTTATATGTCTCCAGAATATGCAATGCTTGGACAATTTTCTGAAAAATCCGACATTTATAGTTTTGGAGTTATGCTTTTAGAGATTATTGTTGGAAAGAAGAACAAAAGTTCATTTACTCCACACCATGTTGCTTATGACCTCTTGAATCATGTATGGAGACAATGGATGGATCAAACACCTTTAAGTATTTTGGACCCAAATATTCAAGAAGATTATTCTACAAATGAAGTAATTAAGTACATTCAGATTGGTCTATTATGTGTTCAAAATGACCCGGATGCTAGACCTTCAATTGCGACAGTTGCTTCTTATCTTAGCAGTTATGCAATTGAATTACCAACTCCAAAAGAACCTGCGTTTTTCTTGCATGGTAGAACTTATTCGGACGTTCTTGCACTAGAATCAAGTTCTACTCAATCTGCCAATAGTTCTGCACAATTTTCAAACAATCAAATGTCGGCAAGTACTTTTATTCCTCGATAG 2703 0.3796 MAYSKILFFLILIRFLCFATIKAQDSTFLYSICSSNRTTTNSTYQINTRTLLSSLSSKAVGNTEFYNTTVTSINPSDSVYGLFMCRGDVLSQFCQKCIVNATEKLSSDSDCHLSKRAVIWYEECMVRYSNTSFFSTVSTRPGVFIMNSSLNVSNTESFMPLLFSTMNKTAEEAAGPLTADNKKFATKEAKISESQTLYCLAQCTPDLSPGDCRTCLNSAIEELPSCCDGKVGARVVFPSCNIRYELYPFYRSINAPSPNELVPQTNHSTQDSRFSQDPFYLSYNCSRNHSKITNKNFKLLLSYLSSNATNGGNFQKVKVEEMVYGLFMCRGDLPVHLCGQCVKNATDQIYSKCLSCPKGIIWYSHCLVRYSDQKILSNIETSPMYRDINITDYTTNQNWFTSTLSNQLSQLANDTGDSDERYKTNSLKLNDVQTLYSLGQCTRDLSSEGCATCLNNVITTSIPWSNFGSVGGRIIYPSCNLRFELFPFYMEGDEAQPPGSPPLPRNADKRKIVFIVVPTIISVMLFSISYYWLKKRGRKSRRTILRENFGEESATLEPLQFDWVVIEAATNNFSKDNYIGKGGFGEVYKGILLDGREVAIKRLSKSSNQGVEEFKNEVLLIAKLQHRNLVAFVGFCLEEQEKILIYEFVPNKSLDYFLFDSQRQKLLTWVERFNIIGGIV*GILYLHENSRLKVIHRDLKPSNILLDENMIPKISDFGLARIVEISQDEGSTNRIVGTFGYMSPEYAMLGQFSEKSDIYSFGVMLLEIIVGKKNKSSFTPHHVAYDLLNHVWRQWMDQTPLSILDPNIQEDYSTNEVIKYIQIGLLCVQNDPDARPSIATVASYLSSYAIELPTPKEPAFFLHGRTYSDVLALESSSTQSANSSAQFSNNQMSASTFIPR* 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1610 899 Gene3D Phosphorylase Kinase; domain 1 535 648 - -
Mtr6g1610 899 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 268 492 - -
Mtr6g1610 899 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 503 890 - -
Mtr6g1610 899 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 15 260 - -
Mtr6g1610 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
Mtr6g1610 899 ProSiteProfiles Protein kinase domain profile. 573 848 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1610 899 Gene3D - 279 374 IPR038408 -
Mtr6g1610 899 Gene3D - 24 133 IPR038408 -
Mtr6g1610 899 Gene3D - 143 249 IPR038408 -
Mtr6g1610 899 Gene3D - 381 488 IPR038408 -
Mtr6g1610 899 ProSiteProfiles Gnk2-homologous domain profile. 140 249 IPR002902 -
Mtr6g1610 899 ProSiteProfiles Gnk2-homologous domain profile. 275 375 IPR002902 -
Mtr6g1610 899 ProSiteProfiles Gnk2-homologous domain profile. 381 488 IPR002902 -
Mtr6g1610 899 ProSiteProfiles Gnk2-homologous domain profile. 26 133 IPR002902 -
Mtr6g1610 899 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 268 492 - -
Mtr6g1610 899 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 503 890 - -
Mtr6g1610 899 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 260 - -
Mtr6g1610 899 SMART serkin_6 573 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1610 899 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Mtr6g1610 899 Gene3D Transferase(Phosphotransferase) domain 1 649 852 - -
Mtr6g1610 899 Pfam Salt stress response/antifungal 293 372 IPR002902 -
Mtr6g1610 899 Pfam Salt stress response/antifungal 154 247 IPR002902 -
Mtr6g1610 899 Pfam Salt stress response/antifungal 393 484 IPR002902 -
Mtr6g1610 899 Pfam Salt stress response/antifungal 33 130 IPR002902 -
Mtr6g1610 899 CDD STKc_IRAK 579 844 - -
Mtr6g1610 899 Pfam Protein kinase domain 574 840 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1610 899 SUPERFAMILY Protein kinase-like (PK-like) 556 884 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1610 Mtr-Chr6 29152518 29158529 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1610 275 899 Receptor kinase-like Gene Family AT4G05200 44.444 3.79e-174 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr6g1610 Pkinase 3e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1610 - - mtr:MTR_6g055960 1484.16