Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1604 ATGGCTTACTCTAAAATTCTCTTTCTCTCAATCCTTATTCGATTCCTTTGTTTTGCAACTATCGAGGCACAAGACTCTACTTTTCTGCATTCCTATTGTTCCACCAATGGTACCACAAGCAATAGCACCTACCAAATCAATACCAAGACACTCCTCTCTTCATTGTCATCAAAAGCCACCGGCAACACCGAATTCTACAACACCACAGTCACCACAGGAAACCACTCTGATTCTGTCTATGGATTGTTCATGTGCAGGGGTGATGTCTCCTTTCAAATATGTGATGAATGCATAGTTAATGCAATTCAAAAACCGTCCTTAGATTGCCCATTATCCAAAGAAGCTATTATTTGGTATGACAATTGCATGGTTCGATACTCCAATGAGTCTTTCTTTTCCAAGGTTTATGCATATCCTTGGGTTATACAGTATAGGTATGCCAACGTCTCAAACACGAAAAGCTTCATGCCTTTATTGTTTTCAACCGGGTACGAAACTGCAGATGAAGCAGCACGTCCACTTATTGGAGATATAAAAAAGAAGTTTGCAACAAAAGAAGCACGAGTTTCGAAAAAACAGACCCTTTACTGTCTAGCTCAGTGCACGCCAGACTTGTCTCCTAACAATTGCAGAACCTGTCTCTATACTGCTATTGATTTTCTTGCTCAGCTTTTTGATGGAAAGCAGGGTGGGATGGTTTTTTTTCCTAGCTGTAATGTTAGGTATGAACTATATCCTTTTTATAGGTCTATCAATACTTCACCAAATGAGCTTGTTCCTCAAACAAAACATTCAAAACAAGATTCTAGATTTTCACAAGATCCAATTTATCTTTCCTATAATTGCCCAAGAAACCACAGTACAATCACTAAGAAAAACTTCAAATTACTTCTCTCTTATTTGTCCTCCAACGCCACAAATGGCGAAAAATCCCATACTGTTAAAGTGGAAGAAATGCTGTATGGCCTCTTCATGTGTCGAGGTGACCTTCCCGTTCGCCTCTGTGGTCAATGTGTGAAAAAAGCAACGGACCAAATATACTCAAAGTGTCTTTCATCTCCAAAGGGTATAATTTGGTACAGCCACTGCTTGGTTCGCTATTCAGATAAAATAATCTTCTCTAACATGGAAACAAGTCCTATGTATAGAGATATAAATATCACCAAACATTCTAGCACAGAGCCAAACTTGTTCACTAGTACATTATCGAATCAGTTATCTCAACTTGCAAATGATACAGGGGACAGTGATGATAGATATAAGACTAATTCATTAAAACTGAATGATAAACAAACCTTGTATAGTCTTGCACAATGTACGAGAGATTTGTCTAGTCAGGATTGCTCTACTTGTCTAAATGATGTGATCGTTACAGCAATTCCATGGTCAAATTTGGGTAGTGTTGGGGGAAGAATTATCTATCCTAGCTGCAATCTGAGGTTTGAATTGTTCCGTTTTTACATGGAGGGCGACGAAGCTCAGCTGCCTTTCCAATTACAAAAAAATGCAAAGAAAATTATCATCATTGTTGTCCCTACAATTATTTTGGTGATGCTATTTTGTGGCTACTGTTGTCATAAGAAAAGGGGAAGAAAGAGTCGTAGGACTATTCTTAGAGAAAATTTTGGTGAAGAAAGTGCGACTTTAGAACCACTACAATTCGATTGGGTGGTAATTCAAGCAGCAACCAACAACTTTTCTGCTGACAATTACATTGGCAAAGGCGGGTTTGGAGAGGTTTACAAGGGTATACTTGTTGATGGACGAGAAGTGGCTATAAAAAGGCTTTCAAAAAGTTCTAATCAAGGTGTAGAAGAGTTCAAGAATGAAGTTTTGTTGATAGCCAAGCTTCAACATAGAAATCTAGTGGCATTTATTGGTTTTTGCCTTGAAGAACAAGAGAAAATACTTATTTATGAATTTGTGCCCAACAAAAGTCTTGATTTCTTTCTATTTGATTCTCAACAACAAAAGTTGTTAACTTGGGTTGAACGCTTCAACATCATAGTAGGAATTGTTAGAGGGATTCTTTATTTGCATGAATATTCTCGACTCAAAGTTATACATCGGGATCTCAAACCTAGCAATATTCTATTGAACGAAAATATGATTCCTAAAATTTCAGATTTTGGTTTGGCTCGAATTGTTGAAATTAGTCAAGATGAGGGAAATACAAATAGAATTGCTGGAACATTTGGTTATATGTCTCCGGAATATGCAATGCTTGGACAATTTTCTGAAAAATCCGACATTTATAGTTTTGGAGTTATGCTTTTAGAGATTATTGCTGGAAAGAAGAATAAAAGTCCATTTACTCCACACCATGTTGCTTATGACCTCTTGAATCATGTATGGAGACAGTGGATGGATCAAACACCTATAAGTATTTTGGACCCAAATATTAAAGAAGATTATTCTACAAATGAAGTCATTAAATGCATTCAGATTGGTCTGTTATGTGTTCAAAATGACCCGAATGCTAGACCTTCAATTGTGACAGTTGCTTCTTATCTTAGCAGTTATGCAATTGAATTACCAACTCCAAAAGAACCTGCGTTTTTCTTGCATGGTAGAACTTATTCCGACGTTCTTGCACAAGAATCAAGTTCTACTCAATCTGCCAATAGTTCTGCACTATTCTCAATCAATCAAATGTCTGCAAGTACTTTTATTCCTCGATAG 2682 0.3706 MAYSKILFLSILIRFLCFATIEAQDSTFLHSYCSTNGTTSNSTYQINTKTLLSSLSSKATGNTEFYNTTVTTGNHSDSVYGLFMCRGDVSFQICDECIVNAIQKPSLDCPLSKEAIIWYDNCMVRYSNESFFSKVYAYPWVIQYRYANVSNTKSFMPLLFSTGYETADEAARPLIGDIKKKFATKEARVSKKQTLYCLAQCTPDLSPNNCRTCLYTAIDFLAQLFDGKQGGMVFFPSCNVRYELYPFYRSINTSPNELVPQTKHSKQDSRFSQDPIYLSYNCPRNHSTITKKNFKLLLSYLSSNATNGEKSHTVKVEEMLYGLFMCRGDLPVRLCGQCVKKATDQIYSKCLSSPKGIIWYSHCLVRYSDKIIFSNMETSPMYRDINITKHSSTEPNLFTSTLSNQLSQLANDTGDSDDRYKTNSLKLNDKQTLYSLAQCTRDLSSQDCSTCLNDVIVTAIPWSNLGSVGGRIIYPSCNLRFELFRFYMEGDEAQLPFQLQKNAKKIIIIVVPTIILVMLFCGYCCHKKRGRKSRRTILRENFGEESATLEPLQFDWVVIQAATNNFSADNYIGKGGFGEVYKGILVDGREVAIKRLSKSSNQGVEEFKNEVLLIAKLQHRNLVAFIGFCLEEQEKILIYEFVPNKSLDFFLFDSQQQKLLTWVERFNIIVGIVRGILYLHEYSRLKVIHRDLKPSNILLNENMIPKISDFGLARIVEISQDEGNTNRIAGTFGYMSPEYAMLGQFSEKSDIYSFGVMLLEIIAGKKNKSPFTPHHVAYDLLNHVWRQWMDQTPISILDPNIKEDYSTNEVIKCIQIGLLCVQNDPNARPSIVTVASYLSSYAIELPTPKEPAFFLHGRTYSDVLAQESSSTQSANSSALFSINQMSASTFIPR* 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1604 893 SMART serkin_6 566 838 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1604 893 Pfam Salt stress response/antifungal 392 482 IPR002902 -
Mtr6g1604 893 Pfam Salt stress response/antifungal 291 369 IPR002902 -
Mtr6g1604 893 Pfam Salt stress response/antifungal 173 245 IPR002902 -
Mtr6g1604 893 Pfam Salt stress response/antifungal 33 128 IPR002902 -
Mtr6g1604 893 Gene3D Transferase(Phosphotransferase) domain 1 642 846 - -
Mtr6g1604 893 Pfam Protein kinase domain 569 833 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1604 893 SUPERFAMILY Protein kinase-like (PK-like) 549 874 IPR011009 -
Mtr6g1604 893 ProSiteProfiles Protein kinase domain profile. 566 842 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1604 893 ProSiteProfiles Gnk2-homologous domain profile. 272 372 IPR002902 -
Mtr6g1604 893 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 265 490 - -
Mtr6g1604 893 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 497 884 - -
Mtr6g1604 893 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 15 258 - -
Mtr6g1604 893 ProSiteProfiles Gnk2-homologous domain profile. 380 486 IPR002902 -
Mtr6g1604 893 Gene3D - 141 247 IPR038408 -
Mtr6g1604 893 Gene3D - 381 486 IPR038408 -
Mtr6g1604 893 Gene3D - 276 370 IPR038408 -
Mtr6g1604 893 Gene3D - 24 131 IPR038408 -
Mtr6g1604 893 CDD STKc_IRAK 572 838 - -
Mtr6g1604 893 ProSiteProfiles Gnk2-homologous domain profile. 137 247 IPR002902 -
Mtr6g1604 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 687 699 IPR008271 GO:0004672|GO:0006468
Mtr6g1604 893 Gene3D Phosphorylase Kinase; domain 1 520 641 - -
Mtr6g1604 893 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 497 884 - -
Mtr6g1604 893 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 265 490 - -
Mtr6g1604 893 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 258 - -
Mtr6g1604 893 ProSitePatterns Protein kinases ATP-binding region signature. 572 594 IPR017441 GO:0005524
Mtr6g1604 893 ProSiteProfiles Gnk2-homologous domain profile. 26 131 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1604 Mtr-Chr6 28969084 28972722 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1604 272 893 Receptor kinase-like Gene Family AT4G05200 42.879 1.22e-175 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr6g1604 Pkinase 5.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1604 - - mtr:MTR_6g055960 1424.45