Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1601 ATGCTATTTTCTATTGGCTACTACTGGCTTAAGAAAAGGGGAAGAAAGAGTCGTAGGACTATTCTTCGAGAAAATTTTGGTGAAGAAAGTGCGACTTTAGAACCACTACAATTCGATTGGGTGGTAATTGAAGCAGCATCCAACAACTTTTCTACTGACAATTACATTGGCAAAGGCGGGTTTGGAGAGGTTTACAAGGGTATACTTGTTGATGGACGAGAAGTGGCTATAAAAAGGCTTTCAAAAAGTTCTAATCAAGGTGTAGAAGAGTTCAAGAATGAAGTTTTGTTGATAGCCAAGCTTCAACATAGAAATCTAGTGGCATTTATTGGTTTTTGCCTTGAAGAACAAGAGAAAATACTTATTTATGAATATGTGCCCAACCAGAGTCTGGATTACTTTCTATTTGATTCTCAACAACAAAAGTTGTTAACTTGGGTTGAACGCTTCAACATCATAGGAGGAATTGTTCGAGGGATTCTTTATTTGCATGAACATTCTCGACTAAAAGTTATACATCGGGATCTCAAACCTAGCAATATTCTATTAAACGAAAATATGATTCCTAAAATTTCAGATTTTGGTTTGGCTCGAATTGTTGAAATTAGTCAAGATGAGGGAAATACAAATAGAATTGCTGGAACATTTGGTTATATGTCTCCGGAATATGCAATGCTTGGACAATTTTCTGAAAAATCCGACATTTATAGTTTTGGAGTTATGCTTTTAGAGATTATTGCTGGAAAGAAGAATAAAAGTCCATTTACTCCACACCATGTTGCTTATGACCTCTTGAATCATGTATGGAGACAGTGGATGGATCAAACACCTATAAGTATTTTGGACCTAAATATTAAAGAAGATTATTCTGCAAATGAAGTCATTAAATGCATTCAGATTGGTCTGTTATGTGTTCAAAATGACCCGAATGCTAGACCTTCAATTGTGACAGTTGCTTCTTATCTTAGCAGTTATGCAATTGAATTACCAACTCCAAAAGAACCTGCGTTTTTCTTGCATGGTAGAACTTATTCCGACGTTCTTGCACTAGAATCAAGTTCTACTCAATCTGCCAATAGTTCTGTACTATTCTCAATCAATCAAATGTCTGCAAGTACTTTTATTCCTCGATAG 1134 0.3554 MLFSIGYYWLKKRGRKSRRTILRENFGEESATLEPLQFDWVVIEAASNNFSTDNYIGKGGFGEVYKGILVDGREVAIKRLSKSSNQGVEEFKNEVLLIAKLQHRNLVAFIGFCLEEQEKILIYEYVPNQSLDYFLFDSQQQKLLTWVERFNIIGGIVRGILYLHEHSRLKVIHRDLKPSNILLNENMIPKISDFGLARIVEISQDEGNTNRIAGTFGYMSPEYAMLGQFSEKSDIYSFGVMLLEIIAGKKNKSPFTPHHVAYDLLNHVWRQWMDQTPISILDLNIKEDYSANEVIKCIQIGLLCVQNDPNARPSIVTVASYLSSYAIELPTPKEPAFFLHGRTYSDVLALESSSTQSANSSVLFSINQMSASTFIPR* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1601 377 Gene3D Transferase(Phosphotransferase) domain 1 126 331 - -
Mtr6g1601 377 SMART serkin_6 50 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1601 377 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 1 368 - -
Mtr6g1601 377 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 368 - -
Mtr6g1601 377 ProSitePatterns Serine/Threonine protein kinases active-site signature. 171 183 IPR008271 GO:0004672|GO:0006468
Mtr6g1601 377 SUPERFAMILY Protein kinase-like (PK-like) 33 359 IPR011009 -
Mtr6g1601 377 Gene3D Phosphorylase Kinase; domain 1 12 125 - -
Mtr6g1601 377 ProSitePatterns Protein kinases ATP-binding region signature. 56 78 IPR017441 GO:0005524
Mtr6g1601 377 ProSiteProfiles Protein kinase domain profile. 50 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1601 377 Pfam Protein kinase domain 52 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr6g1601 377 CDD STKc_IRAK 56 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1601 Mtr-Chr6 28931653 28933692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1601 5 377 Receptor kinase-like Gene Family AT4G23140 51.451 1.93e-136 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Mtr6g1601 Pkinase 6.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1601 - - mtr:MTR_0074s0060 710.679