Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1596 ATGTCTGCGAAACACGACTTCATCTCTAATGTTTCTCCAAGAAAACAATCGTGGACATTGGTTGTGAGGGTTGTTCGTGCTTGGTTTGGTCAAGACCACAAAAATAAAAAACTACCATTTTCCATGGAGTTGGTTCTAATGGATCGAAAGGGTGATCAAATTGGTGCGTCTATACGAAGAACATTGATCTACAAGTTCAAGGAGCAACTCCAAGAGGGAATGGTGTTCACGATTTCCTCATTTGATGTTGATAGCAACAGTGGTTCGTATCGACCATCACGCAACGAATACAAACTGAATTTCACAATCAACACAAAAGTCAAACTATCTAAAACTGTTTTGGTCCCAACAAACGTGTATTCGTTTACACCTGCACCTGATGTTTTCAATGAATCTTACGACAACAACTACTTAGTTGATGTAATTGGAGTCATGATTGGAGTTGGAGTTGAAAGAGAGTACGAAAGAGATGGTGTAAAAACTAAAATGAATGTCATGACTTGGATTCAAATTGGTAGGTACCGTTTTAAATGTACTCTTTTTGGAGAGTATGTTGAAGAGCTGAACTCTTTCCTATCGTCCGATGAATCTCAAAATGTTGTTGTAGCCATTATGTTGACAAAAGTTAAACTGTTTCAAGGAAAATCAGCATTGCAAAATGCATTTTCTTCCACTAGAATCACATTCAATCCTGAAATTGGTGAAACAAAGACTGATACTACTTCTACTCCAGATATTGACATCCCTCTTGTGCCCTCGGCTGCCCAACAACTTCCTGCAATTGTTGATCCTGATCCCCCGTCTTCTCCTCCTCGTTATCCATCCCGTCATCGTAAGTCTACTCAATTTCCTGATTTTGTCTATTCCACATACTCTGCTTCTTTTGCTTCTTTTCTAACCTCTATTTATAGTTTATCTATGCCCTCTTCCTATAAAGAGGCTATACTTGACCCTCTTTGGCAGCAGGCTATGAATGAAGAACTTTCTGCTTTGCACAAGACAGATACATGGGAATTAGTACATCTTCCTTCTGAAAAATGTCTCGTTGGGTATACAAAATCAAAACTAAGTCTGATGGGTCGGTTGAGCGCTACAAAGCACGCCTTGTTGCTAAAGGATTTTCTCAACAATATGGTATAG 1140 0.3912 MSAKHDFISNVSPRKQSWTLVVRVVRAWFGQDHKNKKLPFSMELVLMDRKGDQIGASIRRTLIYKFKEQLQEGMVFTISSFDVDSNSGSYRPSRNEYKLNFTINTKVKLSKTVLVPTNVYSFTPAPDVFNESYDNNYLVDVIGVMIGVGVEREYERDGVKTKMNVMTWIQIGRYRFKCTLFGEYVEELNSFLSSDESQNVVVAIMLTKVKLFQGKSALQNAFSSTRITFNPEIGETKTDTTSTPDIDIPLVPSAAQQLPAIVDPDPPSSPPRYPSRHRKSTQFPDFVYSTYSASFASFLTSIYSLSMPSSYKEAILDPLWQQAMNEELSALHKTDTWELVHLPSEKCLVGYTKSKLSLMGRLSATKHALLLKDFLNNMV* 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1596 379 PANTHER REPLICATION FACTOR A 1, RFA1 22 243 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr6g1596 379 CDD RPA1_DBD_A_like 19 107 - -
Mtr6g1596 379 SUPERFAMILY Nucleic acid-binding proteins 120 238 IPR012340 -
Mtr6g1596 379 SUPERFAMILY Nucleic acid-binding proteins 5 110 IPR012340 -
Mtr6g1596 379 Pfam Domain of unknown function DUF223 43 138 IPR003871 -
Mtr6g1596 379 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 243 - -
Mtr6g1596 379 Gene3D - 6 109 IPR012340 -
Mtr6g1596 379 MobiDBLite consensus disorder prediction 259 278 - -
Mtr6g1596 379 CDD RPA1_DBD_B_like 140 236 - -
Mtr6g1596 379 Gene3D - 115 242 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1596 Mtr-Chr6 28840220 28852806 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1596 8 236 Core DNA Replication Machinery Family AT2G06510 25.738 5.23e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1596 - - mtr:MTR_8g088810 416.387