Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1583 ATGTCTAGGGATTTTGACTGTATCAAGGATTTGAAAAAGGATTTGAATGTCTGGAAAATTCCCTTTAGGGTTCTTGACTCATGGATTGTTACGGCTAGCAATGGGAACCGACACATGGAGCTGATCATTGGCGATACGAAGGGCGATCGGATCCATGCTGTAACTCGGTACAAAGACCTTCAGCGCTGGAAGTCATTGCTTGAAGATAACAAGACTTATGTTTTGCACAATTGTCTTGTGTTTGATAATGACGATGCGTTCAAGCATGTAGATCATCCGTTTAAGGTGGTGTTTGGCGTTGGTTCGAAGGTGACAAGAAATGACAAGCTGACTGACATTCCGTGTCATGAATTCAGATTCAAGTCCTTTAAGGAGATTGAAGATGGGAATTTCAAACCGGATGTTTTGTATGAAATCATTGGCCTGATTCATGAGATTGTGAAGACCTCGGCTTTAGGCTCTGGAAAAAAGCCTTGCACTAATCTTGTGCTCAGAGATGAAATTGGAAATTTGGTTGATGCGACGTTATGGGATAATTATTCTCTGGAATTGATGAAATTTCTGGCTGAACGAGACGATTCGGGCCCTGTTGTGTTGATTTTAACTCATGCACAGTGCAAGCTTGCAGATAACGGTAAGCCGGATATTTGTAACAATTGGTCCGGCTCAAAGTTGTTTATCAATTCGAAGCATCCAGTTGTTAAGAGATTTATGGCTACTGTTCAAGCTCAAGGTCATGGCCTTGGTCGAAATCTGTGTGAAGGTTCGAGTTCTTCTCAGAGATCTCAAAACGATGAATTTTCAAATCTCTCTCAGGTTCGGCCAATTGGTGAATTTAGGAACTTCATGCAGACCACATTTTGCATTACTGTTGGGAAAACGAACAAGTTTAATCCTAACCAGTTTGGCTGGTATTATGAGAGCTGTCCTAAATGTCCAAGATCTTCAAGGTTGAACAATGGTAGCTATAAATGTGGATGTGGAGAGGATGTTGAGGTTCCGTTTACAAGATATAGGGTGATTGTACAAGTTGTGTATGAAGGTGATAAAGCTGATTTTGTCTTTTGGGACAAGGAAGTTGTTCAGATTCTTGGTGTCACTGCTGATACTCTTAGAAAGACTATGCAAGAGGTTGGTGAGGATGATCCGATGATATATCCCAAACATTTGGACAATTTACTCGGTCTTGAGTTGGCTCTACGTGTAAAGTATCAGCCGTATTATCAGCAGTCATCTGTGCAAGGATTTACTTCTGATCCTGCTGTCATTCAAAGAATCAAGCGTCACCTTCAGCCTAATGAGCAATCAGATGTGCAAGAGAATATTGTCCATAATAATCCAAGCCAATCACTTGAACCCGAGAAGATGAATTCTTCTGCTGAATGTTCAAAAACAGTTCCAGTTCCTGTGAATGTGGTCCGTGGTAATCCAAATTTGTCAGTGAAAGTCAAAGAGTTGATTTCTCCAGCTGAATGCCTCAAATCAATTCCCATTCCCATGGAGGAGTCTGCCTCTGTTTATGCTCAAAATGGTTCGGATCAAATTGCTAGCTTGACTCCTACAAAACGTTCGCTTGCTGAGAAATGCGAAGGCAATATTGCATCTAATGATCACAATCCCACATCATTGTCTTCCACTAAGCTGGCTAAATGCATTAAGAAGGAGTAA 1668 0.4119 MSRDFDCIKDLKKDLNVWKIPFRVLDSWIVTASNGNRHMELIIGDTKGDRIHAVTRYKDLQRWKSLLEDNKTYVLHNCLVFDNDDAFKHVDHPFKVVFGVGSKVTRNDKLTDIPCHEFRFKSFKEIEDGNFKPDVLYEIIGLIHEIVKTSALGSGKKPCTNLVLRDEIGNLVDATLWDNYSLELMKFLAERDDSGPVVLILTHAQCKLADNGKPDICNNWSGSKLFINSKHPVVKRFMATVQAQGHGLGRNLCEGSSSSQRSQNDEFSNLSQVRPIGEFRNFMQTTFCITVGKTNKFNPNQFGWYYESCPKCPRSSRLNNGSYKCGCGEDVEVPFTRYRVIVQVVYEGDKADFVFWDKEVVQILGVTADTLRKTMQEVGEDDPMIYPKHLDNLLGLELALRVKYQPYYQQSSVQGFTSDPAVIQRIKRHLQPNEQSDVQENIVHNNPSQSLEPEKMNSSAECSKTVPVPVNVVRGNPNLSVKVKELISPAECLKSIPIPMEESASVYAQNGSDQIASLTPTKRSLAEKCEGNIASNDHNPTSLSSTKLAKCIKKE* 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1583 555 Gene3D - 3 106 IPR012340 -
Mtr6g1583 555 SUPERFAMILY Nucleic acid-binding proteins 4 114 IPR012340 -
Mtr6g1583 555 Gene3D - 111 247 IPR012340 -
Mtr6g1583 555 SUPERFAMILY Nucleic acid-binding proteins 118 245 IPR012340 -
Mtr6g1583 555 Gene3D - 251 430 IPR012340 -
Mtr6g1583 555 SUPERFAMILY Nucleic acid-binding proteins 285 406 IPR012340 -
Mtr6g1583 555 PANTHER REPLICATION FACTOR A 1, RFA1 49 406 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr6g1583 555 CDD RPA1_DBD_A_like 19 104 - -
Mtr6g1583 555 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 49 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1583 Mtr-Chr6 28463289 28467485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1583 18 380 Core DNA Replication Machinery Family AT5G61000 20.317 8.19e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1583 - - mtr:MTR_6g464080 1132.47