Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1575 ATGGGAAGAGGAAGAGTAGTGTTGGAGAGAATAGAGAATAAGATCAATAGGCAAGTAACATTCTCAAAGAGAAGAAGTGGATTGTTGAAGAAAGCCTTTGAGCTTTGTGTTCTATGTGATGCTGAAGTTGCACTTATCATTTTTTCAAGCCGTGGCAAGCTTTTCCAATACAGTAGCACTACTGATATCAACAAAATCATTGAAAGGTATCGGCAATGTCGTTACAGCAAGCCACAAGCTGGAAATTCATTAGGACATAATGAATCACAGAATTTATACCAGGACTATTTAAAATTAAAGGCAAAATATGAGTCTCTTGACCGTAAGCAGAGGCATTTTCATGGGGAAGAACTTGAGCAACTTAGCATGAAAGAATTGCAAAGACTTGAGGAACAACTAGACTTAACCCTCACACAAGCTCGTCAGCAACAAATGAAGAAGCTCATGGCACGAGCTGAGGAATTACGTGAAAAAGTGCATCACTTGGAGGAGGTTAACAAAACATTGGATCCCAAGGCAACAAATGATGAAACCTCAAACCTCGTTGTTGACCAAACAAGTCGTATTCAATTGCACGATATAAATTAA 588 0.3878 MGRGRVVLERIENKINRQVTFSKRRSGLLKKAFELCVLCDAEVALIIFSSRGKLFQYSSTTDINKIIERYRQCRYSKPQAGNSLGHNESQNLYQDYLKLKAKYESLDRKQRHFHGEELEQLSMKELQRLEEQLDLTLTQARQQQMKKLMARAEELREKVHHLEEVNKTLDPKATNDETSNLVVDQTSRIQLHDIN* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1575 195 Coils Coil 123 165 - -
Mtr6g1575 195 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Mtr6g1575 195 PANTHER MADS BOX PROTEIN 1 180 - -
Mtr6g1575 195 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr6g1575 195 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mtr6g1575 195 Pfam K-box region 85 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr6g1575 195 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr6g1575 195 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr6g1575 195 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr6g1575 195 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mtr6g1575 195 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Mtr6g1575 195 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mtr6g1575 195 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 180 - -
Mtr6g1575 195 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1575 Mtr-Chr6 28145724 28151121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1575 1 174 MADS-box Gene Family AT3G02310 51.724 1.44e-55 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mtr6g1575 K-box 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1575 K09264 - gmx:100793681 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1575 6 28145724 28151121 Mtr6g1575 6 28145724 28151121 ECH
Mtr1g3813 1 49681595 49685347 Mtr6g1575 6 28145724 28151121 PCT