Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1564 ATGGGTAAAGGTGGGATGTCAGTTGATGATGATGTTGAACAACAGAATATGGCTGCTTGGCTTGTTGGTTTAAACACTCTCAAGATTCAACCTTTCAATCTTCCTTCTCTTGGACCCCATGATGTCAGAATTAAAATGAAGGCTGTTGGAATCTGTGGGAGTGATGTTCACTACCTCAAGACACTGAGATGTGCAGATTTTATAGTTAAAGAACCAATGGTTATTGGTCATGAGTGTGCTGGGATCATTGAAGAAGTTGGTAGCCAGGTAAAGACTTTGGTACCGGGTGACCGTGTGGCGATCGAGCCTGGGATCAGTTGTTGGCGTTGTGACCATTGCAAACTCGGCCGATATAATCTATGCCCTGATATGAAGTTTTTTGCTACTCCGCCAGTTCATGGCTCACTCGCTAATCAGATAGTTCATCCAGCAGACCTATGTTTTAAACTACCAGAAAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAACCCTTAAGTGTTGGCGTTCATGCTTGTAGGCGAGCTAATATTGGACCAGAAACAAATGTGTTAATTATGGGAGCAGGACCTATTGGACTTGTTACAATGCTTTCGGCTCGTGCTTTTGGAGCACCTAGGATAGTCGTTGTGGATGTGGATGACCATCGTTTATCTGTTGCGAAGAGTCTTGGTGCAGATGATATTGTTAAAGTTTCAACAAACATTCAGGATGTAGCTGAAGAAGTGAAGCAAATTCATAATGTTCTGGGAGCTGGTGTGGATGTTACTTTTGATTGTGCTGGTTTTAACAAAACCATGACTACAGCATTGACTGCTACACAACCAGGTGGCAAAGTTTGTTTAGTGGGAATGGGTCATTCTGAAATGACTGTGCCACTCACCCCAGCTGCTGCAAGGGAAGTTGATGTAGTTGGCATTTTCCGATATAAGAATACATGGCCTCTTTGCCTTGAGTTTCTAAGGAGTGGCAAAATTGATGTAAAGCCACTTATAACTCATAGGTTTGGATTCTCACAAAAGGAAGTTGAAGAAGCCTTTGAAACTAGTGCTCGTGGTGGTAATGCAATTAAGGTCATGTTCAACCTTTAG 1089 0.4288 MGKGGMSVDDDVEQQNMAAWLVGLNTLKIQPFNLPSLGPHDVRIKMKAVGICGSDVHYLKTLRCADFIVKEPMVIGHECAGIIEEVGSQVKTLVPGDRVAIEPGISCWRCDHCKLGRYNLCPDMKFFATPPVHGSLANQIVHPADLCFKLPENVSLEEGAMCEPLSVGVHACRRANIGPETNVLIMGAGPIGLVTMLSARAFGAPRIVVVDVDDHRLSVAKSLGADDIVKVSTNIQDVAEEVKQIHNVLGAGVDVTFDCAGFNKTMTTALTATQPGGKVCLVGMGHSEMTVPLTPAAAREVDVVGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKEVEEAFETSARGGNAIKVMFNL* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1564 362 CDD sorbitol_DH 18 361 IPR045306 GO:0016616
Mtr6g1564 362 SMART PKS_ER_names_mod 23 360 IPR020843 GO:0016491
Mtr6g1564 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 153 326 IPR036291 -
Mtr6g1564 362 Pfam Zinc-binding dehydrogenase 190 320 IPR013149 -
Mtr6g1564 362 Gene3D - 167 307 - -
Mtr6g1564 362 PANTHER SORBITOL DEHYDROGENASE 9 362 - -
Mtr6g1564 362 SUPERFAMILY GroES-like 16 188 IPR011032 -
Mtr6g1564 362 Pfam Alcohol dehydrogenase GroES-like domain 39 150 IPR013154 -
Mtr6g1564 362 PANTHER L-IDONATE 5-DEHYDROGENASE 9 362 - -
Mtr6g1564 362 Gene3D - 27 348 - -
Mtr6g1564 362 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 76 90 IPR002328 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1564 Mtr-Chr6 27703696 27709228 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1564 29 295 Monolignol Biosynthesis Gene Families AT4G37980 26.978 1.15e-18 83.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1564 6 27703696 27709228 Mtr6g1564 6 27703696 27709228 ECH