Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1563 ATGGATTTCGACGGTGGTAATAAGCGTGTTTACAATCGTCTTGGTGGGTCAAACGGTGGTGATTCAAAGAATCAGAAAGTGTGTTTTCAATGGCAAGCAGGAAAGTGTAATCGTTATCCATGTCCTTTTCTGCATAGTGAATTACCTACTTCTAATGGGAATGGTGCTCCTTCTAAACGGGCTTATGCTGATAATTCGAGTTTTTCTGGTAATCGACGTGGTGGATCGAGTTTTAATTCGTGGGGGCCGGGGAGAGGTGGTGGACGTGGTCGCGGTGGGGGACGGGGTGGTGTAGGTGGTGGTGGTGGTAGGGGAGTTGTTGTGAATGTTGAAAGAGTTTGTACTTATTGGATTCAAGGGAGTTGTAGTTATGGAGATAGGTGTAAGTTTCTTCACTCTTGGAATGTTGGTGATGGGTTTTCTTTGTTGACTCAGCTTGAAGGACATAAGAAGGTTGTAAGTGGAATTGCTATGCCCTCTGGTTCGGATAAGCTTTATACTGGAAGTACTGATGAGACTGTAAGGGTTTGGGACTGCCAGTCTGGACAGTGTATAGCTGTGATCAATCTTGGCGGTGAAGTAGGTTGTATGATCAGTGAAGGTCCCTGGCTTTTTGTTGGCATACCTAATTTTGTTAAGGCTTGGAACACACAAAATTCAATGGAGATAAGTCTAGATGGTCCTGTTGGACAAGTTTATGCACTTGTTGTGATTAATGATATGCTCTTTGCTGGTACACAGGATGGAGCTATATTGGTATGGAAATTTAATGTAGCTGCCAACTGTTTCGAGCCAGCTGCATCACTTAAAGGTCATACCCGTGGTGTTGTTTCGTTAGTTGTTGGAGCTAATAGACTTTATTCTGGTTCAATGGACAATACCGTCAGAGTGTGGAACCTTGAAACCTTGCAGTGTTTACAGACACTAACAGAGCACACGTCTGTGGTGATGTCTGTTCTTTGCTGGGATCAGTTCCTTATATCTTGCTCATTAGACAAAACAGTAAAGGTGTGGTATGCTACAGAAAGTGGAAATTTGGAAGTGACGTATACTCACACTGAAGAACATGGTATAATCACCCTTTGTGGGATGCATGATGCACAAGGCAAGCCCATACTTCTATGCTCTTGCAATGACAACACTGTTCGCCTCTATGATCTGCCATCATTTGCAGAGAGAGGTAAGTTATTCAACAAGCAAGAGGTGCGAGCAATTCAGACTGGTCCTGGTAGCATATTCTTCACTGGTGATGGAACCGGCCAAGTGAGAGTTTGGAATTGGATACCCGAACCGGCCACGTCCAATAACGTCCAATAA 1317 0.4404 MDFDGGNKRVYNRLGGSNGGDSKNQKVCFQWQAGKCNRYPCPFLHSELPTSNGNGAPSKRAYADNSSFSGNRRGGSSFNSWGPGRGGGRGRGGGRGGVGGGGGRGVVVNVERVCTYWIQGSCSYGDRCKFLHSWNVGDGFSLLTQLEGHKKVVSGIAMPSGSDKLYTGSTDETVRVWDCQSGQCIAVINLGGEVGCMISEGPWLFVGIPNFVKAWNTQNSMEISLDGPVGQVYALVVINDMLFAGTQDGAILVWKFNVAANCFEPAASLKGHTRGVVSLVVGANRLYSGSMDNTVRVWNLETLQCLQTLTEHTSVVMSVLCWDQFLISCSLDKTVKVWYATESGNLEVTYTHTEEHGIITLCGMHDAQGKPILLCSCNDNTVRLYDLPSFAERGKLFNKQEVRAIQTGPGSIFFTGDGTGQVRVWNWIPEPATSNNVQ* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1563 438 Pfam CCCH-type zinc finger 112 132 IPR041367 -
Mtr6g1563 438 SUPERFAMILY WD40 repeat-like 130 428 IPR036322 GO:0005515
Mtr6g1563 438 ProSitePatterns Trp-Asp (WD) repeats signature. 286 300 IPR019775 -
Mtr6g1563 438 MobiDBLite consensus disorder prediction 52 78 - -
Mtr6g1563 438 ProSiteProfiles Zinc finger C3H1-type profile. 22 48 IPR000571 GO:0046872
Mtr6g1563 438 Gene3D - 225 436 IPR015943 GO:0005515
Mtr6g1563 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 146 178 - -
Mtr6g1563 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 187 IPR001680 GO:0005515
Mtr6g1563 438 ProSiteProfiles Zinc finger C3H1-type profile. 113 135 IPR000571 GO:0046872
Mtr6g1563 438 MobiDBLite consensus disorder prediction 52 101 - -
Mtr6g1563 438 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 269 302 - -
Mtr6g1563 438 PANTHER - 1 433 IPR044715 -
Mtr6g1563 438 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 433 - -
Mtr6g1563 438 Gene3D - 121 224 IPR015943 GO:0005515
Mtr6g1563 438 SMART c3hfinal6 23 47 IPR000571 GO:0046872
Mtr6g1563 438 SMART c3hfinal6 109 134 IPR000571 GO:0046872
Mtr6g1563 438 SMART WD40_4 218 255 IPR001680 GO:0005515
Mtr6g1563 438 SMART WD40_4 343 386 IPR001680 GO:0005515
Mtr6g1563 438 SMART WD40_4 262 299 IPR001680 GO:0005515
Mtr6g1563 438 SMART WD40_4 139 178 IPR001680 GO:0005515
Mtr6g1563 438 SMART WD40_4 302 339 IPR001680 GO:0005515
Mtr6g1563 438 SMART WD40_4 389 426 IPR001680 GO:0005515
Mtr6g1563 438 PRINTS G protein beta WD-40 repeat signature 165 179 IPR020472 -
Mtr6g1563 438 PRINTS G protein beta WD-40 repeat signature 286 300 IPR020472 -
Mtr6g1563 438 PRINTS G protein beta WD-40 repeat signature 326 340 IPR020472 -
Mtr6g1563 438 ProSiteProfiles Trp-Asp (WD) repeats profile. 269 308 IPR001680 GO:0005515
Mtr6g1563 438 Pfam WD domain, G-beta repeat 304 338 IPR001680 GO:0005515
Mtr6g1563 438 Pfam WD domain, G-beta repeat 142 178 IPR001680 GO:0005515
Mtr6g1563 438 Pfam WD domain, G-beta repeat 266 299 IPR001680 GO:0005515
Mtr6g1563 438 SUPERFAMILY CCCH zinc finger 111 133 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1563 Mtr-Chr6 27638653 27643872 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1563 148 310 Eukaryotic Initiation Factors Gene Family AT2G46290 24.865 1.90e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mtr6g1563 WD40 0.00054 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1563 - - mtr:MTR_6g465150 849.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1563 6 27638653 27643872 Mtr6g1563 6 27638653 27643872 ECH