Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1560 ATGACATCTCTAACAACACTCTCCCATTACCATCCCCTTTCTTCCTTCAAAATTCATAAACAAACACACTCTCTTTCACTTTCACTCTCACGTGTTCCTATTCGTCCATTACAATTCCAATTCAAACCAAAACCACTATCATTATCTCGTTCACGTTTTCTTCTTTCTCAATCTCTGCCACGTGCTTATATCAGTGGACCCGCGTCCGACCCGAATGTAGCTGAACCGGATCCGAAAGTTGATGGGTTGCAGCAAGAAGAAGCGGTTATACCGAAAGTTGTAACATGGGAGCTGCTGGGTTTGCTTTTGTTTAAGCATAAATTTCGGATAGCGCTTTGTGTTGCTTCTCTGTTTGCGTGTACTGCTTGTACTCTATCCATGCCCATTTTTTCTGGACGTTTTTTTGAAGTTCTTATTGGTGTCAGACCCGAACCGTTGTGGAGTCTTCTCAGTAAAATGGGAGTTCTGTATGCACTAGAGCCACTTTTTACTGTTATTTTTGTTATAAACATGAACATAGTATGGGAAAAAGTTATGTCAACACTAAGAGCTCAGATCTTTGGTAAAATATTGATTCAGAAGGTTGAGTTTTTTGACAAATACAAGGTAGAGGAAATCACTGGTTTGTTAACATCTGATTTGGGTTCTCTTAAAGATCTTGTCAGTGAGAATGTTTCAAGGGATCGCGGATTCAGGGCATTATCTGAGGTCACTGGAACATTACTCATACTTTTTACTCTATCCCCTCAACTGGCTCCTATTCTGGCTGTTTTGATGATTGCAGTTTCCATTTCAATCGCTGTCTACAAGAGATCAACTGTACCTGTTTTTAAATCACATGGTTTGGCCCAAGCATCTATATCTGATTGTATATCAGAAACATTTTCTGCTATTAGAACAGTTCGATCCTTTAGTGGAGAAAAGCGACAAATGTCTATGTTTGCTAAGCAGGTTCTATCTTTCCAATCGAGCGGTATAAAGCTTGGAACTTTCAAATCTATAAACGAATCTTTGACTAGAGTTGCTGTTTATATTTCATTAACCGCACTATATTGTCTCGGAGGAAGCAAAGTTAAGGCGGGTCAACTCTCTGTCGGAACAATGGCGTCTTTTATTGGATATACTTTCACTTTGACATTCGCTGTTCAAGGATTGGTTAATACTTTTGGAGATCTCCGTGGAACTTTTGCGGCTGTTGAAAGGATCAACTCTGTTTTGTCTGGAGTTCAAGTTGACGATGCCCTTGCCTACGGTTTAGAAAGAGAACTGAAACAAAAAGCAGTGAACGACGAGAACTACAAATTATTCTTCTCTAATAGTTCTGTGGAGACAAACCAAAATAATAATTTGCATTACATGTCAGCATTAAAAACATCAAGCAATGTGTTTAGTTTAGCTTGGTCTGGAGATATTTGTCTTGAAGATGTGTATTTCTCTTACCCTTTAAGGCCAGATGTGGAAATTTTAAGTGGCTTAAATTTAAGACTAAAATGTGGAACTGTAACTGCACTGGTTGGTGCTAGTGGTGCGGGAAAAAGTACGATAGTACAGTTATTGTCTCGTTTTTATGAGCCAACAAGAGGTCGTATAACAGTTGGTGGAGAGGATGTACGAACATTTGACAAAAGTGAATGGGCCCGGGTTGTTTCTATCGTAAATCAAGAACCTGTTCTATTTTCGGTGTCTGTTGGTGAAAATATTTCATATGGGCTTCCAGATGACGATGTTTCTAAAGACGATGTGATTAAGGCAGCAAAGGCTGCAAACGCTCATGATTTTATAATTTCACTTCCACAGGGCTATGATACACTTGTCGGTGAGCGTGGAGGCCTACTGAGCGGAGGACAAAGACAGAGAGTTGCCATTGCCCGAGCTCTACTGAAGAATGCTCCCGTCCTTATACTTGACGAGGCGACAAGTGCTCTAGATACCGTCAGCGAGCGATTGGTCCAAGAAGCACTCAATCATTTGATGAAGGGGAGAACAACATTAGTCATAGCTCACAGATTAAGCACAGTTCAAAATGCCCATCAAATTGCACTCTGTTCAGAAGGGAGGATTGCTGAACTAGGCACTCATTTTGAATTATTGGCTAAGAAGGGTCAATATGCATCACTGCATGGAGCTGGATAG 2133 0.4046 MTSLTTLSHYHPLSSFKIHKQTHSLSLSLSRVPIRPLQFQFKPKPLSLSRSRFLLSQSLPRAYISGPASDPNVAEPDPKVDGLQQEEAVIPKVVTWELLGLLLFKHKFRIALCVASLFACTACTLSMPIFSGRFFEVLIGVRPEPLWSLLSKMGVLYALEPLFTVIFVINMNIVWEKVMSTLRAQIFGKILIQKVEFFDKYKVEEITGLLTSDLGSLKDLVSENVSRDRGFRALSEVTGTLLILFTLSPQLAPILAVLMIAVSISIAVYKRSTVPVFKSHGLAQASISDCISETFSAIRTVRSFSGEKRQMSMFAKQVLSFQSSGIKLGTFKSINESLTRVAVYISLTALYCLGGSKVKAGQLSVGTMASFIGYTFTLTFAVQGLVNTFGDLRGTFAAVERINSVLSGVQVDDALAYGLERELKQKAVNDENYKLFFSNSSVETNQNNNLHYMSALKTSSNVFSLAWSGDICLEDVYFSYPLRPDVEILSGLNLRLKCGTVTALVGASGAGKSTIVQLLSRFYEPTRGRITVGGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENISYGLPDDDVSKDDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRVAIARALLKNAPVLILDEATSALDTVSERLVQEALNHLMKGRTTLVIAHRLSTVQNAHQIALCSEGRIAELGTHFELLAKKGQYASLHGAG* 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1560 710 Gene3D ABC transporter type 1, transmembrane domain 80 408 IPR036640 GO:0005524|GO:0016021
Mtr6g1560 710 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 111 394 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g1560 710 CDD ABC_6TM_TAP_ABCB8_10_like 116 402 - -
Mtr6g1560 710 Gene3D - 469 707 IPR027417 -
Mtr6g1560 710 CDD ABC_MTABC3_MDL1_MDL2 471 707 - -
Mtr6g1560 710 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 462 707 IPR027417 -
Mtr6g1560 710 SMART AAA_5 498 692 IPR003593 -
Mtr6g1560 710 Pfam ABC transporter transmembrane region 112 381 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g1560 710 ProSitePatterns ABC transporters family signature. 612 626 IPR017871 GO:0005524
Mtr6g1560 710 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 471 709 IPR003439 GO:0005524
Mtr6g1560 710 SUPERFAMILY ABC transporter transmembrane region 99 402 IPR036640 GO:0005524|GO:0016021
Mtr6g1560 710 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 48 708 IPR039421 -
Mtr6g1560 710 Pfam ABC transporter 489 640 IPR003439 GO:0005524
Mtr6g1560 710 PANTHER ABC TRANSPORTER B FAMILY MEMBER 28 48 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1560 Mtr-Chr6 27563327 27572492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1560 176 706 Calmodulin-binding Proteins AT2G36910 35.940 2.95e-78 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1560 K05657 - gmx:100791034 1104.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1560 6 27563327 27572492 Mtr6g1560 6 27563327 27572492 ECH