LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr6g1555	ATGATAAGTACTAACAACTCTTCCTATTCACACTCCATTTCCTCAAAAGATTTTTCTCCCTTCGACGCATCATCACCGGATTCTGAGGTGCGGTTAGCATCAAGCAACCCGAAGAAGAGAGCGGGGAGGAAGATATTTAAGGAAACTCGTCACCCTGTCTATAGAGGTGTGAGGAAGAGGAACTTAAATAAATGGGTTTGTGAAATGAGGGAGCCGAACACAAAGAATAGGATTTGGCTAGGAACTTTTCCAACAGCCGAGATGGCAGCCCGAGCCCACGATGTTGCCGCGATAGCATTGAGGGGCCGCTATGCCTGTCTCAATTTTGCAGACTCGGTGTGGCGCCTTCCTATTCCAGCAACTTCCGCGATAAAAGATATTCAAAAGGCAGCTACAAAAGCCGCCGAAGCTTTTAGACCAGACAATACTTTAATGACCAGTGACATTGACACCGTTGTAGCTGTTGTCGCAACACAGGAGCTGAATATGTTTCGTGTTGAAGTCGAAGAAGAGGAAGTGTTGAATATGCCAGAGTTGTGGAGGAATATGGCACTAATGTCCCCTACACATAGCTTTGGGTATCATGATCAGTATGAAGATATTCATATACAAGACTTTCAAGATGATGAGGACTTTAAAAAAAGGTCTGTTACGACGATCTGGGCTGTGACTTCAATTGGGGTGCATTCGCTGCATTTCACCGTCATATCAAGGATTGTGATGCGAACCTTGCTTTTATGTGTCTGA	747	0.4485	MISTNNSSYSHSISSKDFSPFDASSPDSEVRLASSNPKKRAGRKIFKETRHPVYRGVRKRNLNKWVCEMREPNTKNRIWLGTFPTAEMAARAHDVAAIALRGRYACLNFADSVWRLPIPATSAIKDIQKAATKAAEAFRPDNTLMTSDIDTVVAVVATQELNMFRVEVEEEEVLNMPELWRNMALMSPTHSFGYHDQYEDIHIQDFQDDEDFKKRSVTTIWAVTSIGVHSLHFTVISRIVMRTLLLCV*	249

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr6g1555	248	PRINTS	Ethylene responsive element binding protein signature	54	65	IPR001471	GO:0003700\|GO:0006355
	Mtr6g1555	248	PRINTS	Ethylene responsive element binding protein signature	76	92	IPR001471	GO:0003700\|GO:0006355
	Mtr6g1555	248	MobiDBLite	consensus disorder prediction	1	46	-	-
	Mtr6g1555	248	Gene3D	AP2/ERF domain	53	111	IPR036955	GO:0003700\|GO:0006355
	Mtr6g1555	248	CDD	AP2	54	112	IPR001471	GO:0003700\|GO:0006355
	Mtr6g1555	248	ProSiteProfiles	AP2/ERF domain profile.	53	110	IPR001471	GO:0003700\|GO:0006355
	Mtr6g1555	248	MobiDBLite	consensus disorder prediction	1	32	-	-
	Mtr6g1555	248	SMART	rav1_2	53	116	IPR001471	GO:0003700\|GO:0006355
	Mtr6g1555	248	Pfam	AP2 domain	52	102	IPR001471	GO:0003700\|GO:0006355
	Mtr6g1555	248	PANTHER	CBF/DREB1 TRANSCRIPTION FACTOR	1	223	-	-
	Mtr6g1555	248	PANTHER	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D	1	223	IPR045277	GO:0003700
	Mtr6g1555	248	SUPERFAMILY	DNA-binding domain	53	112	IPR016177	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr6g1555	Mtr-Chr6	27444938	27448360	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr6g1555	7	195	AP2-EREBP Transcription Factor Family	AT4G25470	53.769	1.50e-63	196

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Mtr6g1555		AP2	1.6e-13	CL0081