Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1554 ATGTTTACTACTAACAACTCTTCCTATTCACAATCCATTCCCTCAACAGCATCTTCTTCGTATGACATGTCAACTCCGAATTCGGAGGTACGATTAGCGGCTAGTAACCCAAAGAAGCGAGCAGGGAGGAAGATCTTCAAGGAAACTCGCCACCCGATGTATAGAGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAACCCAACACAAAGACCAGGATTTGGCTGGGGACTTTTCCAACACCCGAAATGGCAGCCCGAGCCCACGATGTTGCCGCAATGGCATTGAGGGGCCGCTATGCCTGTCTCAATTTTGCAGACTCGGTGTGGCGCCTTCCTATTCCAGCAACTTCCGCGATAAAAGATATTCAAAAGGCGGCTGCTGAAGCTGCCGAAGCTTTTAGACCAGACAAGACTTTAATGATTAATGATATTGACACCGTAGTACCTGTCGTGGCCACAAAGGAGTTGAATATGTTTTGTGTGGAAGTCGAAGAAGAGCAGGAAATGTTGAATATGCCAGAATTGTTGAGGAATATGGCACTAATGTCCCCTACACATAGCTTTGAGTATCATGATCAGTATGAAGATATTCATGTACAAGACTTTCAAGATGATGAGGACTTTAAAAAAAAGTCTGTTACGACGATCTGGGCTGTGACTGCAATTGGGGTGCATACGCCACATTTCACCGTAATATCAAGGATTGTGATCGTTTCCATGTGA 738 0.4499 MFTTNNSSYSQSIPSTASSSYDMSTPNSEVRLAASNPKKRAGRKIFKETRHPMYRGVRKRNLDKWVCEMREPNTKTRIWLGTFPTPEMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSAIKDIQKAAAEAAEAFRPDKTLMINDIDTVVPVVATKELNMFCVEVEEEQEMLNMPELLRNMALMSPTHSFEYHDQYEDIHVQDFQDDEDFKKKSVTTIWAVTAIGVHTPHFTVISRIVIVSM* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1554 245 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Mtr6g1554 245 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 224 IPR045277 GO:0003700
Mtr6g1554 245 MobiDBLite consensus disorder prediction 1 41 - -
Mtr6g1554 245 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Mtr6g1554 245 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Mtr6g1554 245 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Mtr6g1554 245 MobiDBLite consensus disorder prediction 1 32 - -
Mtr6g1554 245 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Mtr6g1554 245 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Mtr6g1554 245 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Mtr6g1554 245 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Mtr6g1554 245 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1554 Mtr-Chr6 27439171 27440656 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1554 2 212 AP2-EREBP Transcription Factor Family AT4G25470 49.772 8.43e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g1554 AP2 7.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1554 - K09286 mtr:MTR_6g465460 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr1g3796 1 49514453 49515836 Mtr6g1554 6 27439171 27440656 ECH
Mtr6g1554 6 27439171 27440656 Mtr6g1554 6 27439171 27440656 ECH