Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1553 ATGTTTACTACTAACAACTCTTCCTATTCACACTCCATTTCCTCAGAAGCATCTTCTTCCTACTATAACTCATTACCGGAATCGGAGATACGATTAGCAGCTAGTAACCCGAAGAAGAGAGCAGGGAGGAAGATATTCAAGGAAACTCGCCACCCGGTGTATAGAGGTGTAAGGAAGAGGAACTTAGATAAATGGGTTTGTGAAATGAGGGAACCCAACACGAAGACTAGAATTTGGCTAGGAACTTTTCCAACAGCCGAGATGGCAGCCCGAGCCCACGATGTTGCTGCGATGGCATTGAGGGGTCGCTACGCCTGTCTCAATTTTGCAGATTCGGTGTGGCGGCTTCCTATTCCAGCAACTTCCTCAATAAAAGATATTCAAAAGGCAGCTACAAAAGCCGCCGAAGCTTTTAGACCAGACAATACTATAATGATTACCAACATTGAGACTGTTGTAGCTGTTGTCGCCACAAAGGAGTTGAATATGTTTTGTGTGGAAGAAGAAGAGGAAATGTTGAATATGCCGGAGTTTTGGAGGAATATGGCACTAATGTCCCCTACACATAGCTTTGAGTATCATGATCAATATGAAGATTTTCATTTTCAAGACTTTCAAGATGATGAGGACTTTAAAAGAAGATCTATCACCATGAGTTGGGTTCTTACTGCAATTGGAGTTCTTTCGCCACATTTCACGGTAACATCAAGGATCGTGATTGTTGCCGTGACCGCAAACCCTACTTTTCTATTTCTGGTTTCTTTGTTTTCTTCTTGGCAAGGAAAGCTACAAAAGAAGAATATGAATGAAACTTGA 816 0.4203 MFTTNNSSYSHSISSEASSSYYNSLPESEIRLAASNPKKRAGRKIFKETRHPVYRGVRKRNLDKWVCEMREPNTKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPATSSIKDIQKAATKAAEAFRPDNTIMITNIETVVAVVATKELNMFCVEEEEEMLNMPEFWRNMALMSPTHSFEYHDQYEDFHFQDFQDDEDFKRRSITMSWVLTAIGVLSPHFTVTSRIVIVAVTANPTFLFLVSLFSSWQGKLQKKNMNET* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1553 271 Gene3D AP2/ERF domain 53 111 IPR036955 GO:0003700|GO:0006355
Mtr6g1553 271 CDD AP2 54 112 IPR001471 GO:0003700|GO:0006355
Mtr6g1553 271 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Mtr6g1553 271 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 221 IPR045277 GO:0003700
Mtr6g1553 271 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 221 - -
Mtr6g1553 271 SUPERFAMILY DNA-binding domain 53 112 IPR016177 GO:0003677
Mtr6g1553 271 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Mtr6g1553 271 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Mtr6g1553 271 Pfam AP2 domain 52 102 IPR001471 GO:0003700|GO:0006355
Mtr6g1553 271 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1553 Mtr-Chr6 27430584 27432154 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1553 31 210 AP2-EREBP Transcription Factor Family AT4G25470 53.968 8.29e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g1553 AP2 2.3e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1553 - K09286 mtr:MTR_6g465460 489.96