Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1551 ATGTTTACTAATAACAATGGGGAGGGGCGATTAGCGGAAAGTTGCCCGAAGAAACCGGCCGGGAGGAAGAAGTTTAAGGAGACTCGCCACCCGGTGTATAGGGGTGTGAGGAAGAGGAACTTAGATAAATGGGTTTGTGAAATGAGGGAACCCAACAAAAAGACTAGGATTTGGCTAGGGACTTTTCCAACGGCTGAGATGGCTGCACGAGCACACGACGTTGCAGCCATGGCATTAAGGGGCCGCTATGCCTGTCTCAACTTTGCAGACTCGGTGTGGAGGCTTCCTATTCCTGCCTCCGCTGAAGCAAAAGACATTCAAAGGGCAGCTGCAGAAGCCGCCGAGGCTTTCAGACCAGACAAGACTTTAATGACTAACGACATTGACACCGTTGTGGCTGTCGTCGTCACAGAAGAACTTAGTTTATTTTGTGTTGAATTGGAAGAAGAGGAGGAAGTGTTGAATATGTTTTGTGTGGAAGTCGAAAAAGAAGAGGAAGTGTTGAATATGTCAGAGATGTGGAGGAATATGGCGTTAATGTCCCCTACACATAGTATGGAGCATGAGTATGAAAATTTTGATTTACAAGACTTTCAAGATGAAGAGGTATTAAAAAAAAGTCAGTTAAAATGA 633 0.4518 MFTNNNGEGRLAESCPKKPAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSVWRLPIPASAEAKDIQRAAAEAAEAFRPDKTLMTNDIDTVVAVVVTEELSLFCVELEEEEEVLNMFCVEVEKEEEVLNMSEMWRNMALMSPTHSMEHEYENFDLQDFQDEEVLKKSQLK* 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1551 210 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 206 IPR045277 GO:0003700
Mtr6g1551 210 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Mtr6g1551 210 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Mtr6g1551 210 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Mtr6g1551 210 MobiDBLite consensus disorder prediction 1 27 - -
Mtr6g1551 210 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 3 206 - -
Mtr6g1551 210 SUPERFAMILY DNA-binding domain 32 91 IPR016177 GO:0003677
Mtr6g1551 210 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Mtr6g1551 210 PIRSF PTI6 11 203 IPR017392 GO:0003700
Mtr6g1551 210 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Mtr6g1551 210 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Mtr6g1551 210 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1551 Mtr-Chr6 27413837 27416703 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1551 10 200 AP2-EREBP Transcription Factor Family AT4G25470 56.281 4.45e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g1551 AP2 6.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1551 - K09286 mtr:MTR_6g465460 262.307