Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1550 ATGTATACAAGTAACAACGGGGAGGGGCGGTTAGCGGCGAGTTGCCCAAAAAAACCAGCAGGGAGGAAGAAGTTTAAGGAGACTCGCCACCCGGTGTATAGAGGTGTGAGGAAGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAACCAAATAAGAAGACTAGGATTTGGCTAGGGACTTTTGCAACAGCCGAGATGGCTGCCCGTGCACACGACGTTGCAGCAATTGCATTGAGGGGCCGCTACGCCTGTCTCAACTTTGCAGACTCGGCGTGGAAGCTTCCTATTCCTGCCTCCGCTGAAGCAAAAGACATTCAAAGGGCAGCTGGAGAAGCCGCTGAGGCTTTCAGACCAGACAAGACTTTAATGACTACTGGCATTGACACGGTTGTGGCTGTTGTCGTTGCGGTGGAAGAAGAGGAAGAAGTGTTGAATATGTTTTGTGTGGAAGTCGAAAAAGAAGAGGAAGTGTTGAATATGCAAGAGTTGTGGAAAAATATGGCACTAATGTCCCCTACACATAGTTTTGAGCATGAGTATGAAGATTTTGATGTACAATTTCAAGATGAAGAGACATTAGTGTTCTCTATACTCTTTCTCTTTCAAGAGCACCATCATGTGTGA 627 0.4641 MYTSNNGEGRLAASCPKKPAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTRIWLGTFATAEMAARAHDVAAIALRGRYACLNFADSAWKLPIPASAEAKDIQRAAGEAAEAFRPDKTLMTTGIDTVVAVVVAVEEEEEVLNMFCVEVEKEEEVLNMQELWKNMALMSPTHSFEHEYEDFDVQFQDEETLVFSILFLFQEHHHV* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1550 208 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
Mtr6g1550 208 MobiDBLite consensus disorder prediction 1 25 - -
Mtr6g1550 208 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Mtr6g1550 208 Gene3D AP2/ERF domain 32 90 IPR036955 GO:0003700|GO:0006355
Mtr6g1550 208 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Mtr6g1550 208 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Mtr6g1550 208 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Mtr6g1550 208 SUPERFAMILY DNA-binding domain 32 91 IPR016177 GO:0003677
Mtr6g1550 208 CDD AP2 33 91 IPR001471 GO:0003700|GO:0006355
Mtr6g1550 208 PIRSF PTI6 10 109 IPR017392 GO:0003700
Mtr6g1550 208 PIRSF PTI6 104 203 IPR017392 GO:0003700
Mtr6g1550 208 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 3 195 - -
Mtr6g1550 208 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 3 195 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1550 Mtr-Chr6 27407407 27409272 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1550 10 194 AP2-EREBP Transcription Factor Family AT4G25470 59.474 4.34e-71 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g1550 AP2 1.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1550 - K09286 mtr:MTR_6g465460 268.855