Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1548 ATGACTACTGTGGCTGGAATCAAGTGTGGGAATACTGATCTGGCATTGACAGTCAGGGTAATTCACCTGTGGAGTGTTCCTGATCGCACAAATCCTGTTGTGGACGGAAGCCTGCATATGCTTTTGCTTGATGAAAAGTGCGGCAAAATTCATGCAAGTGTCAGGAAGAATCTGATCCACCTCTTTAAGGATCAGATTGACGAGGGTTCAGCTTATGTGATTGAGAGCTTCATGGTGGGATCAAATGATCATGCTTACAAGACTACGGGCCATAAATACAAGTTGAATTTTATGGGAGGTACAAATGTGTTCAGGGTTTCTTCTGTTAACATTCCTGCTCATCATTTCACCTTCATGCCATTTATGCAAATTGTGAGTGCAACCAGGGAAGATAAGTTGCTTGATGTAATTGGTCATGTGGTCGAGAAGGATGTTATCAAAGAGACTGAAAAAAATGGGAAGAAGCGCAAGGTTCTAGATATTATGCTCGAGGATCTGGAAAGCAATCGATTACATTGTACATTATGGGATAGTTATGCTGAAAGAATGCAACTATTTCTTGACACACATGAATCAGCACAGCCTGCGATTTTGATACTCCAGCTTTGCAAGATGAAGAAATTTTTTGGAGTTATGGGAGTATCTAATGCTTTTTATGGAACAAAGATGTTCTTGAACCCTGACATACCCGACGTTATTGAATACAAAACACGCTTGAATGAAACTGATGTTGCCCTTACTCAAGTTGTCAGTCAAATGTCTGCACCGAACTTGCTCACTGTAGCTGAAGATTTGATGCAATCTAGGCGAATGACAATCGAGGATCTGATTGAGTCCAATGAGAGATGTTCTGGTGCTGTGCTGGCGAGGACGTGCGAACTTGAGGTAGACATGGGATGGTACTATCAAGCATGTACTAAGTGCGCATCAAGGGTTATAACTGCTGCTGGGAGCCTATATTGTGACAATAGCAAGATGCCAAGAACTGCCATTCCTAGGTTCAAGGTTCATGTGCAGGCGATAGACAACACTGGATCAACAACCTTTGTCCTGTTTGATCGTGTTGTGTCTCAGTTTTTAGGGAGAAGCGTTCAAGACTTGCTTGATAATATGCCAAATAGGAATGATTTACCTGCTTATCCAACTGAACTCAATGTGTTTGTGGATAAGAGAATGCTTTTTAAGGTTGAGGTCAGCGATGCCAATTTGTTTCGTAACTGGCGTAGTTATACTGTCAATAAATTGACTGATAGTGATGAAATTATCAAGAACTTCCTGACATTACATGGAATAAATATGGATGATGTAGGCGCTGGAGCTAATATTGTTGGGCCATTAACTGCGAACACTGAAAATGATGCTGCGGGGGCCATTGAAGGAGGTGATTCAAACAACAAGGATGATGTCGTTGATGTGGCCGGAACTCCTACAAGCAGGTTGGCTGGGAAAAAGGCAATAGTTGAACTCCAAGATGTTGATCCGATCAATATCGACGTTGTGGGAACATTTACTCAAATTGAAAAGGAGATGCATGAGGGTGTAATGGAAAGAGGTGAGTCAAGCAACAAAACTGAAGATTTGGAGATAACACCGACTCCTATAAGAAGCTATGCAGGGAAGAAGCTGATGAAGGTGTCAGAGAGAATGGAGGCCATCAACGTTGAGATTCTAAATGATCTCGATGTCACCGAAACTTCTAGAAGCAAGTTGGTTGAAAATGAGTCAATTGTCGGCCTTGAAAGTTTTCATCCAATCAATACCGATGGTGCCGGAACATTTACTCAGATTGCTAATGAAATTCGTGGGGAGATGACCGGTGGAGGTAACTCAGACAATCAGGTTAATGATCTAGAGAATGCTCAAACTCCTATAGGCAACTCTATTGGGAAAAGGCCTACTACATTTTCTGAGGGAATAGAATCAATGAATATTGAGATTGGGGATGCCTCTGCTACCAAGAAGCCAAGAACGGATAACTTGAGGGGCAAGGAAAAGACAAAAAGGGGTTTTGTACGGATTAGAGATCTGAAGTAA 2034 0.4194 MTTVAGIKCGNTDLALTVRVIHLWSVPDRTNPVVDGSLHMLLLDEKCGKIHASVRKNLIHLFKDQIDEGSAYVIESFMVGSNDHAYKTTGHKYKLNFMGGTNVFRVSSVNIPAHHFTFMPFMQIVSATREDKLLDVIGHVVEKDVIKETEKNGKKRKVLDIMLEDLESNRLHCTLWDSYAERMQLFLDTHESAQPAILILQLCKMKKFFGVMGVSNAFYGTKMFLNPDIPDVIEYKTRLNETDVALTQVVSQMSAPNLLTVAEDLMQSRRMTIEDLIESNERCSGAVLARTCELEVDMGWYYQACTKCASRVITAAGSLYCDNSKMPRTAIPRFKVHVQAIDNTGSTTFVLFDRVVSQFLGRSVQDLLDNMPNRNDLPAYPTELNVFVDKRMLFKVEVSDANLFRNWRSYTVNKLTDSDEIIKNFLTLHGINMDDVGAGANIVGPLTANTENDAAGAIEGGDSNNKDDVVDVAGTPTSRLAGKKAIVELQDVDPINIDVVGTFTQIEKEMHEGVMERGESSNKTEDLEITPTPIRSYAGKKLMKVSERMEAINVEILNDLDVTETSRSKLVENESIVGLESFHPINTDGAGTFTQIANEIRGEMTGGGNSDNQVNDLENAQTPIGNSIGKRPTTFSEGIESMNIEIGDASATKKPRTDNLRGKEKTKRGFVRIRDLK* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1548 677 Pfam Domain of unknown function DUF223 40 130 IPR003871 -
Mtr6g1548 677 PANTHER BNAC07G49340D PROTEIN 40 430 - -
Mtr6g1548 677 CDD RPA1_DBD_C 299 417 IPR013955 -
Mtr6g1548 677 Gene3D - 1 104 IPR012340 -
Mtr6g1548 677 CDD RPA1_DBD_A_like 18 103 - -
Mtr6g1548 677 SUPERFAMILY Nucleic acid-binding proteins 269 419 IPR012340 -
Mtr6g1548 677 Gene3D - 260 428 IPR012340 -
Mtr6g1548 677 PANTHER REPLICATION FACTOR A 1, RFA1 40 430 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mtr6g1548 677 MobiDBLite consensus disorder prediction 651 668 - -
Mtr6g1548 677 MobiDBLite consensus disorder prediction 648 668 - -
Mtr6g1548 677 SUPERFAMILY Nucleic acid-binding proteins 2 108 IPR012340 -
Mtr6g1548 677 SUPERFAMILY Nucleic acid-binding proteins 116 241 IPR012340 -
Mtr6g1548 677 Gene3D - 109 247 IPR012340 -
Mtr6g1548 677 CDD RPA1_DBD_B_like 135 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1548 Mtr-Chr6 27377812 27381447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1548 42 399 Core DNA Replication Machinery Family AT5G08020 21.833 9.10e-12 66.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1548 - - mtr:MTR_1g105785 486.493