Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1546 ATGCTTCCTTATAAATATACCACCTTTCTCTTGGTTTTCTTAAATCTCAACACCAAAATTTCAACCTCTTTACTCTATAACAAACTCTTATCTTCAATTCTAGATTTCACTATCAAAACCTTTTTCTACTATCTCCAGCACATGGATATGTTTACAAATAATAACTCCTATTCACACCCCTTTTCTCCAACTTGCTCCGAGAGTTCATTCCCGAATTCAGAGGGCTCGCAAGGGATGTCAATTTCCAACGAGGAGGTGAGGTTAGCAGCGACTACTCCAAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACTCGCCACCCGGTATATAGGGGTGTGAGGAAAAGAAACTTAGATAAATGGGTGTGTGAAATGAGGGAACCAAATAAGAAGACTAAAATTTGGCTAGGCACTTTTCCAACTGCGGAGATGGCAGCCCGAGCACATGATGTTGCCGCAATGGCATTGAGGGGCCGCTACGCCTGTCTCAACTTTGCAGACTCCGCGTGGCGGCTCCCTATACCTGCCACCACTCAGGCAAAAGATATACAAAAGGCGGCTGCACAGGCCGCTGAGGCTTTCAGACCAGACAAGACTTCAATTACTAATGACATTGACACGGCTATTTCCACCTCTGCTACGGCGGAACAGAGTAGGACTTTTATGGAAGAGGAAGAAGAGGGGGTGATGAACATGCCAGAGTTGTTGAGGAATATGGCACTAATGTCTCCTACACATAGCTCTGGGTATAATGAATATGAAAATATTCATGTTCAAGACTTTCAAGATTTACAAGATTTTCAAGATGAAGAGGTATTAATCAAGCATAAAGTGCTTCTCATCCCTTCTATTAGTATATATGAAAGAAGAATAGAAGTTTGGATTTTAAAAAATAGTTTGTAA 903 0.4208 MLPYKYTTFLLVFLNLNTKISTSLLYNKLLSSILDFTIKTFFYYLQHMDMFTNNNSYSHPFSPTCSESSFPNSEGSQGMSISNEEVRLAATTPKKRAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSAWRLPIPATTQAKDIQKAAAQAAEAFRPDKTSITNDIDTAISTSATAEQSRTFMEEEEEGVMNMPELLRNMALMSPTHSSGYNEYENIHVQDFQDLQDFQDEEVLIKHKVLLIPSISIYERRIEVWILKNSL* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1546 300 CDD AP2 110 168 IPR001471 GO:0003700|GO:0006355
Mtr6g1546 300 SUPERFAMILY DNA-binding domain 109 168 IPR016177 GO:0003677
Mtr6g1546 300 SMART rav1_2 109 172 IPR001471 GO:0003700|GO:0006355
Mtr6g1546 300 Pfam AP2 domain 108 158 IPR001471 GO:0003700|GO:0006355
Mtr6g1546 300 Gene3D AP2/ERF domain 109 167 IPR036955 GO:0003700|GO:0006355
Mtr6g1546 300 PRINTS Ethylene responsive element binding protein signature 110 121 IPR001471 GO:0003700|GO:0006355
Mtr6g1546 300 PRINTS Ethylene responsive element binding protein signature 132 148 IPR001471 GO:0003700|GO:0006355
Mtr6g1546 300 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 50 275 IPR045277 GO:0003700
Mtr6g1546 300 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 50 275 - -
Mtr6g1546 300 ProSiteProfiles AP2/ERF domain profile. 109 166 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1546 Mtr-Chr6 27323500 27327143 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1546 87 251 AP2-EREBP Transcription Factor Family AT4G25470 60.000 1.75e-65 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g1546 AP2 3.9e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1546 - K09286 mtr:MTR_6g465460 256.914