Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1544 ATGTTTACAACTAACAACTCTATCTACTCACACCCTTCCTCTTCCTCCCTCTCACATATCATTGACGAATTCAGAGGGCTTTCATATCATAGGATGTCAGTTTCCAACAAGGAGGTGCGGTTAGCTGTGACTACCCCGAAGAAGCGTGGAGGGAGGAAGAAATTCAAGGAAACTCGCCACCCGGTGTATAGGGGTGTGAGGAGTAGGAACCTAGATAAATGGGTGTGTGAAATAAGACAGCCTAACAAAAAGACCAAGATTTGGCTAGGAACTTTTCCAACAGCCGAGATGGCAGCTCGGGCCCATGATGTTGCGGCACTGGCGTTGAAAGGTGGCGACGCCTGTCTCAACTTTGCAGACTCGGCCTTGACGCTCCCTATTCCTGCTACTTGCGAGACAAAAGATATACAAAAGACGGCTGCTGAAGCTGCTGAGGCATTCAGACCAGGCAAGACTGTAATGACAAATGATGTCGCGGCATTGGCATTAAGAGGTCGCAACGCCTGTCTCAACTTTGCAGACTCGGCCTCGCGGCTTCCTATTCCTGCCACTAAAGAGACAAGAGATATACAAAACGCGGCTGCAGAAGCTACTGAGGCTTTCAGACCAGACAAGACTTTAACGACTAATGACAATGAAACCGCTGTAGCTGCAGCCGCCGCAGAGGAGCAGCTTATGTTTAGTATGGAAGAGGAAGAAGAAGAAGAGGAAGAGTTGAACATTCCTGAGTCATTGAGGAATATGGTTCTAATGTCCCCTACACATAGCTTGGGGCATGAATTTGAACATATTGATCATGGAGACTTTCAAGATGATGAGGTGTCACTATGGAGTTTTACAATTTGA 846 0.4728 MFTTNNSIYSHPSSSSLSHIIDEFRGLSYHRMSVSNKEVRLAVTTPKKRGGRKKFKETRHPVYRGVRSRNLDKWVCEIRQPNKKTKIWLGTFPTAEMAARAHDVAALALKGGDACLNFADSALTLPIPATCETKDIQKTAAEAAEAFRPGKTVMTNDVAALALRGRNACLNFADSASRLPIPATKETRDIQNAAAEATEAFRPDKTLTTNDNETAVAAAAAEEQLMFSMEEEEEEEEELNIPESLRNMVLMSPTHSLGHEFEHIDHGDFQDDEVSLWSFTI* 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1544 281 Gene3D AP2/ERF domain 62 120 IPR036955 GO:0003700|GO:0006355
Mtr6g1544 281 Coils Coil 218 238 - -
Mtr6g1544 281 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 157 - -
Mtr6g1544 281 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 156 281 - -
Mtr6g1544 281 SMART rav1_2 62 125 IPR001471 GO:0003700|GO:0006355
Mtr6g1544 281 SUPERFAMILY DNA-binding domain 62 121 IPR016177 GO:0003677
Mtr6g1544 281 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Mtr6g1544 281 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Mtr6g1544 281 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Mtr6g1544 281 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 156 281 IPR045277 GO:0003700
Mtr6g1544 281 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 157 IPR045277 GO:0003700
Mtr6g1544 281 CDD AP2 63 121 IPR001471 GO:0003700|GO:0006355
Mtr6g1544 281 ProSiteProfiles AP2/ERF domain profile. 62 119 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1544 Mtr-Chr6 27242751 27243801 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1544 17 148 AP2-EREBP Transcription Factor Family AT5G51990 64.444 3.17e-55 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g1544 AP2 5.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1544 - - mtr:MTR_6g465850 503.056