Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1543 ATGTATCCAACTACAAACTCTGTCTCTTCCTCTTCCTCCGACATGTCGCTGCCGAATTCAGAGGGCTCTCATTGGATGTCAATTTGCAACGAGGAGATGCGATTAGCGGCAACTACCCCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAAACTCGCCACCCAGTCTATAGAGGAGTGAGGAAGAGGAACTTAGATAAATGGGTTTGTGAAATGAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGGACTTTTCCAACTGCCGAGATGGCAGCCCGTGCCCACGATGTTGCTGCAATGGCATTGAGGGGCCGCTACGCTTGTCTCAACTTTGCAGACTCAGCGTGGCGGCTCCCCAAACCTGCAACTACTCAAGCAAAGGATATACAAAAGGCTGCTACAGAGGCCGCCGAGGCTTTCAGACCAGACAAGACTTTATTGACTAATCACAATGACAATGACAATGACAATGACAAAGAGAATGACATGGCTGTAGTTGCCACTGCCACTGAGGAGCAGAGTATGATTTGTATGGAAGAGAAAGAAGAAGGAGTGATGAACATGCAAGAGATGTGGAGTAATATGGCGCTAATGTCTCCTACACATAGCTTGGGGTATTATGAGTATCAATATATTAATGAAGACTTTCAAGATGAGGAAGTATCACTATGGAGTTTTTAA 684 0.462 MYPTTNSVSSSSSDMSLPNSEGSHWMSICNEEMRLAATTPKKRAGRKKFKETRHPVYRGVRKRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAAMALRGRYACLNFADSAWRLPKPATTQAKDIQKAATEAAEAFRPDKTLLTNHNDNDNDNDKENDMAVVATATEEQSMICMEEKEEGVMNMQEMWSNMALMSPTHSLGYYEYQYINEDFQDEEVSLWSF* 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1543 227 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Mtr6g1543 227 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Mtr6g1543 227 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Mtr6g1543 227 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
Mtr6g1543 227 MobiDBLite consensus disorder prediction 1 21 - -
Mtr6g1543 227 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Mtr6g1543 227 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Mtr6g1543 227 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 8 226 - -
Mtr6g1543 227 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Mtr6g1543 227 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Mtr6g1543 227 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 8 226 IPR045277 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1543 Mtr-Chr6 27178525 27179549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1543 6 227 AP2-EREBP Transcription Factor Family AT4G25470 50.877 8.44e-65 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g1543 AP2 2.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1543 - K09286 mtr:MTR_6g465990 350.132