Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1542 ATGTTTCCATCTAACAACCCTTCCTCTTCACATCCCTCTTCCTCAAAACCTTCATCTTCCTCACACACAATATCACTTCCAAATTTAGAGGTCTCTCGTGGGATGTTTGTTACCAACGACGAGGTCCGGTTAGCTTCAACTACCCCGAAGAAGCGTGCAGGGAGGAAGAAGTTCAAGGAGACACGCCACCCGGTGTACAGGGGTGTGAGGAGGAGGAACTTAGATAAATGGGTGTGTGAAATGAGGGAGCCTAACAAGAAGACTAAGATTTGGCTAGGGACTTTTCCAACGGCCGAGATGGCAGCACGAGCACATGATGTCGCGGCATTGGCATTAAGAGGTCGCAACGCCTGTCTTAATTTTGCTGACTCTGCCTCGCGGCTTCCTATTCCTGCCACTACAGAGACAAGAGATATACAAAAGACGGCTGCAGAAGCTGCCGAGGCTTTCAGACCAGACAAGACTTTAACGACTGATGACAATGACAATGCTGTAGCTGCAGCCGCCGCAGAGGAGCAGCTTATGTTTAGTATGGAAGAGGAAGAAGAAGAAGAGGAAGAGTTGAACATTCCTGAGTCATTGAGGAATATGGCTCTAATGTCCCCTACACATAGCTTGGGGCATGAGTTTGAACATATTGATCATGGAGATTTTCAAGATGATGAGGTGTCACTATGGAGTTTTTCAGTTTGA 693 0.4733 MFPSNNPSSSHPSSSKPSSSSHTISLPNLEVSRGMFVTNDEVRLASTTPKKRAGRKKFKETRHPVYRGVRRRNLDKWVCEMREPNKKTKIWLGTFPTAEMAARAHDVAALALRGRNACLNFADSASRLPIPATTETRDIQKTAAEAAEAFRPDKTLTTDDNDNAVAAAAAEEQLMFSMEEEEEEEEELNIPESLRNMALMSPTHSLGHEFEHIDHGDFQDDEVSLWSFSV* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1542 230 SUPERFAMILY DNA-binding domain 65 124 IPR016177 GO:0003677
Mtr6g1542 230 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 1 230 - -
Mtr6g1542 230 Gene3D AP2/ERF domain 65 123 IPR036955 GO:0003700|GO:0006355
Mtr6g1542 230 ProSiteProfiles AP2/ERF domain profile. 65 122 IPR001471 GO:0003700|GO:0006355
Mtr6g1542 230 CDD AP2 66 124 IPR001471 GO:0003700|GO:0006355
Mtr6g1542 230 MobiDBLite consensus disorder prediction 1 27 - -
Mtr6g1542 230 PRINTS Ethylene responsive element binding protein signature 66 77 IPR001471 GO:0003700|GO:0006355
Mtr6g1542 230 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Mtr6g1542 230 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 1 230 IPR045277 GO:0003700
Mtr6g1542 230 PIRSF PTI6 129 230 IPR017392 GO:0003700
Mtr6g1542 230 PIRSF PTI6 34 152 IPR017392 GO:0003700
Mtr6g1542 230 Pfam AP2 domain 64 114 IPR001471 GO:0003700|GO:0006355
Mtr6g1542 230 SMART rav1_2 65 128 IPR001471 GO:0003700|GO:0006355
Mtr6g1542 230 Coils Coil 167 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1542 Mtr-Chr6 27136180 27137234 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1542 43 228 AP2-EREBP Transcription Factor Family AT5G51990 55.224 2.05e-62 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr6g1542 AP2 8.6e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1542 6 27136180 27137234 Mtr1g3797 1 49533617 49534641 PCT