Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1504 ATGGGTGGTGAGGGTAGAGTTGAAGTTGTGAGTGGCAAAGGGTGCTCGAGGCTGTTTTCGTCTTCAATCAGAAATCTTCAACCATTGGACCAAATGTCTCCTGTTTCATCCTCTCCGCAATTGCCATCAAATGCTCCTTTTGCTGGTCTTGTTATATGTGTTACTGGTTTATCCAAAGAAGCAAGGAATCAGGTCATGGAGGCTACAGAGAGATTAGGTGGCCAGTATAGCCCCAATCTGCATCCTCAATGTACTCATTTGGTGGTTCAGAGTTTTGGTGGACGCAAATTTGAGCATGCGCTGAAGCATGGAACAAAAAATGGTCTCTTTGTTGTCACACTGGGTTGGTTTGTGGATAGTGTCAGGAAAAATGTAAGGTTGACCGAATCACTTTATAGTTTGAAGAGTTATGGGGATAACGATATGAAGTTGGATGATTTTAGACTGCTTCCCGGGTACACAAATGCTGGAAATTGTCTTCCTGCAAGAATCCATGAAATCAAGCATACTCATCATGCTGAAGAATTTCGAAGATTCTCTGGTGCAGAGTCTAACAGAAGTTTGGACTCAAGTTTGTCTGGTTGCTCCATCTACGTTGATCCAGGCATTTCATCCGAATTGCAGAACAAGGTTGCTGAAACTGCATCCAGAGAAGGTGCTAGTTTGGCAGACCAATGGTTTGTTGGCTGTAATGTTAGTCATGTAGTCACTGAAGGGACATCCATTCAAAGATATCTTGGATACTCTAGTAACCTCATTACACCAGTGTGGATTCTCAAAACAGCTAAGGAGAAACAAGTACAAAGGCTTGTTAGCATGTCTGTTGATTTGGCAAGACAAGTTGGCCTGATGCTTGATGACATTTCAGGAAAGGAAATAGTAAAGCAAAAAGTCCATGATGATCTTCAGGGAAGTAAAAGTGAAATTGGTTGCAAAGAAAGACAACAAATTGTAAATTCAGCGAAAAATGGTGTCAGAAGTCGCCGTGGTCGTCGAATGCAGACTTGTCAGACTCCGATCCGTCCGATTACACCCAATAACCTTCTGGACTCTATCTGTTGGTCAATATCGGAAGCAACTTCAACTGCTTCCATTTACACAGACTCTTTCAGTGCTGAAGATCCTAGTGAAAATCATACCTCAATATTTTTTTATGCAAAAGGGGATGGGAAGGATTCAGATGCTTCATTTTCACACTCCACACGTCCTCTAACAGAAAGTGAGAAGTCCGAGTTGATATTTAAAAACCATTTTCTCACCATACTCTTCCCTGTGGACCGGTTTTCCGAGATCGGCGCTTCCACAAGAACGTTGTTCAGCCATAACGGTTTTACATGTATTCAGGTGTTGGATCATATCCATGCATTTTATCAGGAGAACATGTCAAGCCTTGAAATAGATGTGGCGATTCATACAGATTCAAGACATGCGGACAGGCTTCGATCAGTTTACTCAAGTAAGGAAACAGCGGAGCGTGGGTATGTGATGTTGAAACGAATTGAATTTTTGGGTAGTCGTACGAGTTTTGAAATGTTGAAGCGCGTGAGTGGAGACAACAACTCCAATGTGTATGAGTTATTACTTAGGGCATAA 1593 0.4218 MGGEGRVEVVSGKGCSRLFSSSIRNLQPLDQMSPVSSSPQLPSNAPFAGLVICVTGLSKEARNQVMEATERLGGQYSPNLHPQCTHLVVQSFGGRKFEHALKHGTKNGLFVVTLGWFVDSVRKNVRLTESLYSLKSYGDNDMKLDDFRLLPGYTNAGNCLPARIHEIKHTHHAEEFRRFSGAESNRSLDSSLSGCSIYVDPGISSELQNKVAETASREGASLADQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPVWILKTAKEKQVQRLVSMSVDLARQVGLMLDDISGKEIVKQKVHDDLQGSKSEIGCKERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISEATSTASIYTDSFSAEDPSENHTSIFFYAKGDGKDSDASFSHSTRPLTESEKSELIFKNHFLTILFPVDRFSEIGASTRTLFSHNGFTCIQVLDHIHAFYQENMSSLEIDVAIHTDSRHADRLRSVYSSKETAERGYVMLKRIEFLGSRTSFEMLKRVSGDNNSNVYELLLRA* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1504 530 Gene3D BRCT domain 45 136 IPR036420 -
Mtr6g1504 530 ProSiteProfiles BRCT domain profile. 187 275 IPR001357 -
Mtr6g1504 530 SUPERFAMILY BRCT domain 41 135 IPR036420 -
Mtr6g1504 530 ProSiteProfiles BRCT domain profile. 42 134 IPR001357 -
Mtr6g1504 530 CDD BRCT_TopBP1_rpt2_like 46 124 - -
Mtr6g1504 530 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 530 - -
Mtr6g1504 530 SMART BRCT_7 44 124 IPR001357 -
Mtr6g1504 530 SMART BRCT_7 189 265 IPR001357 -
Mtr6g1504 530 Pfam Family of unknown function (DUF6699) 354 514 IPR046522 -
Mtr6g1504 530 Pfam twin BRCT domain 50 116 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1504 Mtr-Chr6 25641436 25648642 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1504 39 134 Core DNA Replication Machinery Family AT1G77320 37.113 8.44e-11 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1504 - - gmx:100815253 876.315