Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1482 ATGGACAAAAACTCAAGCTTGAATTTGCAGGAAAACTCTTTGCTTGGAGCCAATCAGTTATTGGAAAATGATTCCATGCCGAACTGTGACGACGAATTGAAGCCGAAGGTTGGACAAATATTTGATACGTTAGCAGAAGGTAAACTGTTTTACCAGAATTATGCACATAACGTCGGGTTTAGTGTGCGTTCATCATCGGAAACTACAGATAAAAATGGTGTGAAACGTTGGAAATACTTTGTTTGCTCGAAAGAAGGTTATTTACCGGATAAGAAAAAAGATGAAGTGCTTGATGCAGTTGCTGTCAAATCTAGAAGAAGGAGTCTTACAAGAGAAGGATGCAATGCAAATGCCGTTTTCAAATGGGTTGAAGGAGGTAAGTATGAGCTTGCTCGATTTAATGAAAGTCATACACATGCACTTGCTTCACCCTCGAAGAGGCCATTTCTAAGATCATCAAGAAAGGTGAATCCAATGCACAAGAGCTTATTACATGCATATGGTAGAGCAAATATTGGGCCTTCAAAATCATTCCACTTAATGAAAGAACAATTTGGGGGTTATGAAAATGTTGGATGCACGCAAAAGGATCTTCAAAATTATAAAAGAGATTTACAGGCTTTGCTCAAAGATTCTGATGCAAATGTTTTTATTGATAACTTTAGAAGGAAGCAAGAACTTAATCCATCATTTTTTTATGCATACGAGGTAGATGAAGAAGGCCGACTAAGGTATGTTTTTTGGGCAGATAATATTTGTAGGAAAAATTATTCATTATTCGGGGATGTGGTTTCATTCGATACTACATATCGAACAAATAAGTATTCTATGATTTTTGCACCTTTCACTGGTGTAAACCACCATAGACAATCTATTACTTTCGGAGCAGGATTTTTGGCAAATGAGAAAATTGATTCATTCACATGGTTGTTTGAAAAGTTTTTGGAAGCGATGGGAGGACGTCAGCCAACTCTTATAATAACTGATCAAGATCCTGCAATGAAAGTGGCTGTAAAGCAGACTTTTCCTACTTGTTTTCATAGATTGTGCATGTGGCATATAATGAAAAAAGTTTCCGAAAAAATAGGTGCTTCCTTGAATGATGATGAAGAGTTCAACCAATCTTTCAAATCATGTGTTTGGGGATCAGAGACACCAGATGAGTTTGAAGAAACATGGGACAATATCATTTTTGACTTTGAGTTAGAAGAGAATGAGTGGCTGTCATATATGTTTGAAATTCGAAGCATGTGGATTCCAACATACTTTAAAGACGTTTTGTTGGCTGGGATAATGAGAACAACATCAAGATCAGAAAGTGAGAATTCGTTTTATGGAAATTTCTTGAATCCTAATGTCAACTTGGTTGAATTTTGGATGAGGTTTGATTCAGCAATCGAAGCACAACGACATAAGGAGTTACTTGCCGATAACAGTTCAATTCATTCCATACCAAAACTAATGTTGGATCGTGACATAGAGCGGCATGCAAGAGATGTGTATACTCGCGAGAACTTTTATATATTTCAGAAGGAATTATGGATGGCTTGTCTTGATTGTGGAATTGAAAATAAGAAAGAGGAAGATGGAATGGAAATATTTCTGGTGCATGATAATAGTAAGGTCAATCGTAATCTTCGAGAAGTAGTGTACAATTTGTCTGATCACAATGCAAACTGCTCCTGCAAAATGTTCCAGGCTGAAGGAATACCTTGTAGACACATACTTTGTGTTGTAAAGGGAAAAAAATTGAATGAAATACCAAGTAAGTACATATTGAATAGGTGGACTAAGTTTGCAAATAAAAAACCTGTGTTTGACATAGGTGATATTGTCTATGAAAAGGCTGGGCAAGGTGGACTCGTTTCAAATGTCTGGGATAAGTTATTTAGGTGTGTGGAGAAGGCTGGGCAAGATAAAGAAAAGCTGCTTATTGTGTTAAATGGGGCTGTTATAATGGAAAAAGAGTTGGATGAGTTTGAAGGGAGTTCTAAGCAAACCAAGACAAATGATTTGGGAACTTACATCAGAACAAATATTCCTGAGAAAGTAGAAATTCTTCCACCACAGTTTGCAAAGACTAAAGGCAGTGGTAAAAGAATCAAAAGTGGCAAAGAGAAGGCTGTCGAACAACAACAAAAAAGAACGAGACTTTGCAAGGCATGTGGTGAATATGCGCATCATGACAGCCGCAATTGTCCTAACAAATAA 2211 0.3695 MDKNSSLNLQENSLLGANQLLENDSMPNCDDELKPKVGQIFDTLAEGKLFYQNYAHNVGFSVRSSSETTDKNGVKRWKYFVCSKEGYLPDKKKDEVLDAVAVKSRRRSLTREGCNANAVFKWVEGGKYELARFNESHTHALASPSKRPFLRSSRKVNPMHKSLLHAYGRANIGPSKSFHLMKEQFGGYENVGCTQKDLQNYKRDLQALLKDSDANVFIDNFRRKQELNPSFFYAYEVDEEGRLRYVFWADNICRKNYSLFGDVVSFDTTYRTNKYSMIFAPFTGVNHHRQSITFGAGFLANEKIDSFTWLFEKFLEAMGGRQPTLIITDQDPAMKVAVKQTFPTCFHRLCMWHIMKKVSEKIGASLNDDEEFNQSFKSCVWGSETPDEFEETWDNIIFDFELEENEWLSYMFEIRSMWIPTYFKDVLLAGIMRTTSRSESENSFYGNFLNPNVNLVEFWMRFDSAIEAQRHKELLADNSSIHSIPKLMLDRDIERHARDVYTRENFYIFQKELWMACLDCGIENKKEEDGMEIFLVHDNSKVNRNLREVVYNLSDHNANCSCKMFQAEGIPCRHILCVVKGKKLNEIPSKYILNRWTKFANKKPVFDIGDIVYEKAGQGGLVSNVWDKLFRCVEKAGQDKEKLLIVLNGAVIMEKELDEFEGSSKQTKTNDLGTYIRTNIPEKVEILPPQFAKTKGSGKRIKSGKEKAVEQQQKRTRLCKACGEYAHHDSRNCPNK* 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1482 736 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 25 157 - -
Mtr6g1482 736 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE ISOFORM X1 205 609 - -
Mtr6g1482 736 SMART 26again6 558 585 IPR006564 GO:0008270
Mtr6g1482 736 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 205 609 IPR031052 GO:0006355
Mtr6g1482 736 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 25 157 IPR031052 GO:0006355
Mtr6g1482 736 Pfam SWIM zinc finger 558 576 IPR007527 GO:0008270
Mtr6g1482 736 ProSiteProfiles Zinc finger SWIM-type profile. 547 583 IPR007527 GO:0008270
Mtr6g1482 736 Pfam FAR1 DNA-binding domain 50 142 IPR004330 -
Mtr6g1482 736 Pfam MULE transposase domain 263 357 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1482 Mtr-Chr6 24729132 24731628 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Mtr6g1482 MULE 9.7e-31 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1482 - - soe:110798711 799.66