Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1479 ATGAACTTTCTCCGACGACTCTTCGGCGGCAAAAAACACCGTAATCCACCACCAGAACCACCCACCAACAACAAAAAAGACAAAAGAACATGGAGTTTCACAAAGAACAACACAAGACAAAAAACAAACAAAAGTTCTGACCCTTCAACTTCTTCTTTCTCTGATAACTATGATGCTAATAAACATGCCATTGCTGTTGCTGCTGCTACTGCCGCCGTTGCTGAAGCTGCACTCGCTGCTGCTCATGCTGCCGCTGAGGTTGTTAGATTGACAAGTAATACGACTACTGGAAATTCTTCCGGAGCACCTCGAACTCCGACAACTGTCAGGAGACGGTTGTCGGACGAAATTGATGCTGCCGTGAAGATTCAGTCGGCTTTCCGAGGTTATTTGGCAAGGAGGGCATTAAGAGCACTTAAAGCATTGGTGAAATTGCAAGCATTAGTGAGAGGTCACATTGTAAGAAAGCAGACAGCTGATATGCTAAGACGAATGCAAACATTGGTTCGACTTCAGTCTCGGGCACGCGCAAGTCGTGTGCACATTTCCGATAATATGCACTCTTTCAAGTCTTCGCTTTCTCATTACCCTGTTCCTGATGATTATGAGCACCCACTTCGTGTCTATAGTACGAAATTTGATGGATCTTCCATCCTCAAGAGATGTAGTTCAAATGCAAATTTTAGAGACATGAACTTAGAAAGAGCGCGGTTTGGTTCAAATTGGTTAGACAGTTGGATGGAAGAAAACACATGGAGCCAAACCGGCGACACTTCATCGAAAAATGTAAATGATGATGAGAAGAGTGACAAAATTCTTGAAGTAGATACTTGGAAACCACATTTGAAATCACAACATAGTACTAGCACCTCTTTTCAACATCATTATTCATCTTCTGATTACAATAATGAAAATTTGATGGTACAAGATTCGCCGTCAAAACGTTCTTCTAAAGCTTATAATCCAAGTCTCTCTTCTATGAAGCATCAGAAAGGAAAAGAAGAAGAAGTAGCTTCTTTGCGAACCGCCGAGAGTAGTCCACAGGCATTTTCGGCTTCTTCAAGACTCGAAAGTGGTTCGAGGAGAGGTCCTTTTACACCTACTAAAAGTGAGAGTTCATGGGGATTTTTCAATGCTCACTCTGGTTATCCTAGTTATATGGCAAATACTCAATCTTCTAGGGCTAAGGTTAGGTCACAAAGTGCTCCAAGACAAAGGCTTGAGTTTGAGAGATACGGTTCATCTAATAGGTCTATTCAAGGTCTTTGGGAATCAGGGTCTAATTCAGAAATAGATTCTGATTTTAGGAGCAAGGTTTATCCAACCACAAGTAGCTTGAACAGAATTGGGAGTAGTACCAATTTAAGGTGA 1371 0.4179 MNFLRRLFGGKKHRNPPPEPPTNNKKDKRTWSFTKNNTRQKTNKSSDPSTSSFSDNYDANKHAIAVAAATAAVAEAALAAAHAAAEVVRLTSNTTTGNSSGAPRTPTTVRRRLSDEIDAAVKIQSAFRGYLARRALRALKALVKLQALVRGHIVRKQTADMLRRMQTLVRLQSRARASRVHISDNMHSFKSSLSHYPVPDDYEHPLRVYSTKFDGSSILKRCSSNANFRDMNLERARFGSNWLDSWMEENTWSQTGDTSSKNVNDDEKSDKILEVDTWKPHLKSQHSTSTSFQHHYSSSDYNNENLMVQDSPSKRSSKAYNPSLSSMKHQKGKEEEVASLRTAESSPQAFSASSRLESGSRRGPFTPTKSESSWGFFNAHSGYPSYMANTQSSRAKVRSQSAPRQRLEFERYGSSNRSIQGLWESGSNSEIDSDFRSKVYPTTSSLNRIGSSTNLR* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1479 456 MobiDBLite consensus disorder prediction 35 53 - -
Mtr6g1479 456 PANTHER CALMODULIN-BINDING PROTEIN 1 453 - -
Mtr6g1479 456 MobiDBLite consensus disorder prediction 283 327 - -
Mtr6g1479 456 ProSiteProfiles IQ motif profile. 140 167 IPR000048 GO:0005515
Mtr6g1479 456 Gene3D - 117 168 - -
Mtr6g1479 456 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 161 IPR027417 -
Mtr6g1479 456 MobiDBLite consensus disorder prediction 341 371 - -
Mtr6g1479 456 MobiDBLite consensus disorder prediction 283 371 - -
Mtr6g1479 456 Pfam IQ calmodulin-binding motif 140 157 IPR000048 GO:0005515
Mtr6g1479 456 Pfam IQ calmodulin-binding motif 118 137 IPR000048 GO:0005515
Mtr6g1479 456 MobiDBLite consensus disorder prediction 18 34 - -
Mtr6g1479 456 MobiDBLite consensus disorder prediction 1 53 - -
Mtr6g1479 456 MobiDBLite consensus disorder prediction 390 413 - -
Mtr6g1479 456 ProSiteProfiles IQ motif profile. 116 144 IPR000048 GO:0005515
Mtr6g1479 456 SMART iq_5 115 137 IPR000048 GO:0005515
Mtr6g1479 456 SMART iq_5 138 159 IPR000048 GO:0005515
Mtr6g1479 456 Pfam Protein of unknown function (DUF4005) 346 410 IPR025064 -
Mtr6g1479 456 PANTHER IQ-DOMAIN 5-RELATED 1 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1479 Mtr-Chr6 24681871 24689437 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1479 1 423 IQD Protein Family AT5G62070 47.126 2.76e-62 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1479 - - gmx:100785181 541.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr6g1479 6 24681871 24689437 Mtr6g1479 6 24681871 24689437 ECH
Mtr6g1479 6 24681871 24689437 Mtr1g3785 1 49413128 49418579 PCT