Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr6g1478 ATGGATGATCTTTGGAGTATAATTTGCTTTAGTGTGTTCCTGCTAATAATCATGTTTGCATTCATCATCATGATCCTAAAGACTTCTTCAAGAAGACCCTTTTGGAGTCTGGTAAGATATTCAAACTTGCAACTGGTATCTGCCATAACAATTATCTTTATTGGTCTGCTGCGTTTATCGTTAGGAATTAACGGATGGTGGATCGATCTCTTTCATGGATTCACATGGTTGTTAGTAAGTTTAATTGTAAGTCTTCAGATAAAACAACTCACAAGAGCATGGTTGTGGATGTTTTCTTTTTTCATGTTCTTTGTTTCTGGTGTATTATGTTCTTTATCCATGTCTTCTTATGCAATCGGTAGTAGCGAACTCTCCTTCAATGCAGCTTTAGATGTTTTATCTTTTTCAGGAGCAACTTTACTTCTGTTATGCACATACCAAGTGTGTACGGGTAAATCCATTGATGAAAGCTTTTATGCTCCATTAAATGGTCAGATCAACGAAGTTGATCCTGTTAGCAATATAACCCCATTTTCGAAGGCTGGATTCTTCAGTAAGATTTCGTTTTGGTGGTTAAATCCATTGATGAAAAGGGGTCAAGAGAAAACACTTGTAGACGAGGATATCCCGAAGTTAAGAGAGTTTGACCGTGCAAAAAGTTGTTATTTGTCATTTGTAGAACAGTTAAACAAACAAAAACAACATGAATCATCATTATATTCGTCGGTCTTTTGGACAATAATTTTGTGCTACCAGAGAGAGATTTTGATAACAGGACTCTTTGCTTTGCTCAAGGTACTTGCTCTAACTTCTGGTCCTCTATTTCTGAATGAATTTATATCGGTTGCTGAAGGCAATACAAGTTTCAATTATCAGGGTTATATATTAGCGATATCACTCTTCTTTATAAAGATCATTGGATCCGTATCACAAAGACAATGGTATTTCCGGAGTAGACTTGTTGGGATGAAAGTTAGATCACTACTTAATGCATCCATTTATAAAAAAATATTAAGGTTGTCCAATTCTGCTAGATTGATTCACTCTAGTGGTGAGATAATCAATTATATAATCGTAGATGCTTATAGAATTGGAGAATTTCCGGTTTGGTTTCACCAGACTTGGACAACAAGCCTCCAACTGTGTATTGCATTAGTAATTCTTTTCCGCACAATTGGACTAGCAATTCTAGCATCATTGGCAATGATAATTCTCACTATGCTTTGCAATGCTCGCCTAGCCAAGTTAGAGCACAAGTTTCAAAGGCAACTTATGGTGGCACAAGATGAGAGATTAAAGGCTAGTTTTGAGTCTTTTGTTACTATGAAAGTGTTGAAGTTATATGCATGGGAAACACATTTTAAAAATGTTGTATATTACTTACGAAATGTGGAACTCAAATTGCTATCAGCAGTGCAGTTAAGAAAGGCGTTCTCTGTCTTTATCGTTTGGACATCACCATTGTTGGTATCTGCTGCTTCTTTTCTAGCATGTTATTTTCTGAAAGTTCCTTTGCATGCAAGTAATGTTTTCACTATTGTGGCAACTTTGCGTCTCATTCAAGAACCAATTTCAAGCATCCCAGATGTTATTGCAGTGATCATTGAGGCAAAAGTTGCGTTCTCTCGGATTGTTAATTTCCTTGAGGCACCGGAACTGCAGAGAGAAAATTTCAAGAAAAAATGCTTCAATGATAACCTTAAAGGCTCAATTTCAATAAAATGTTCTGACTTTTCATGGGAAGGTAATGCATCAAAACCAACACTAAGGAACATAAGTATGGAGGTTAGACATGGGCAAAAGGTGGCTATTTGTGGAGAAGTTGGCTCAGGAAAATCAACTCTCATTGCAACAATTCTTGGAGAAGTTTCAAAAACAAAGGGAACGATTGACGTTCAAGGGAAGTTTGCGTATGTTTCTCAAACAGCATGGATACAAACAGGAACAGTACGTGAAAATATTTTGTTTGGATCTGAGTTGGATGATCAAAGATATCAAGAGACACTTCAAAAGTCTTCACTGGTAAAGGACCTTGAGTTGCTTCCCTATGGTGACCTCACTGAAATAGGTGAGAGAGGAGTTAATTTAAGTGGAGGTCAAAAGCAGCGAATTCAACTTGCTCGTGCTCTTTATCAGAATGCTGATATATATCTATTAGATGATCCATTTAGTGCTGTTGATGCGCATACTGCGAAAAATTTGTTTAATGAATACATCATGGAAGGACTCAAAGGGAAAACACTCATACTTGTTACTCATCAAGTTGACTTCCTCCCAGCCTTTGATTCTATTTTGTTGATGTCTAATGGGGAAATCCTACAATCTGGTCCATATCACCAACTAATGACCTCAAGCCAAGAATTCAATAACCTTGTCAATGCTCGCAAAGAGACTGCTGGTTCTGACCTACTTGCAAGTGCTACTTTTTCCGAAAGACATTCAACTTCCATAAAGAGTATGCAAGCTTCGGTGTTGAAGCAGTATAAAGCACCAAATGGAAATCAATTGATTCATCAAGAAGAGAGAGAGAAAGGCGACACAGGATTGAAGCCTTACTTACAATATCTGAATCAGATGAAAGGCTATATATTATTCTCTACGGCTTTTCTTTGTCACCTTATTTTTGTGTTTTGTCAGATATTGCAAAACTCGTGGATGGCTTCTAATGTTGACAATCCCCTTGTCAGCACATTGCGATTGATTTTAGTTCATCTCCTTATCGGTGGTTTTTCAACAGTTTTTTTGTTCATCAGATGTCTACTTATAGTTACTTTGGGTCTTAAATCATCAAAAGATTTATTTTCACAACTGATGAATTCCCTCTTTCATGCACCTATGTCATTTTATGATTCAACACCATTGGGAAGGATACTTAGTAGGGTCTCGTCTGATCTAAGCATTATGGATCTTGACCTGCCCTTTAGCCTCAGTTATTCAATGGGAGCCACTATAAATTTTTATTCTAGTCTTACAGTTTTAGCAGTTGTCACATGGCAAGTCTTAATTGTCGCTATACCAATGGTTTATGTAGTTATTCGCATGCAGAGATACTACATTGCCTCTGAAAAAGAAGTAATGAGGATGAATGGCACCACAAAGTCGTCATTAGCTAATCATGTAAATGAAACTGTTGCTGGAGCTGCAACTATAAGGGCTTTTGAGGAGGAAGATTGTTTTTTTGAGAAAAACCTTGACCTAATTGATATAAATGCTAGTGCTTTTTTCCATAGTTTTTCCTCAAAAGAGTGGTTGATCCAACGGTTAGAAATAATCAGTGCAGTTGTTCTTACCACTGGAGCACTTTGCATGGTTATGCTCCCTCCTGGAACATTCACCTCAGGAATTATTGGCATGGCTTTATCCTACGGCCTTTCACTAAACAATTCCTTAGTATTTTCAATTCAAAATCAATGCACTCTTGCGAATCACATAATATCAGTAGAGAGATTAAATCAATATATGCATATACAAAGCGAGGCCAAGGAAACTGTAGAAGGTAATCGTCCTCCTCTGAATTGGCCAGTTGCAGGCAAAGTAAAAATAAACGACTTAAAGATACGATACAGGCCTGACGGACCACTTGTACTTGACGGGATCACATGCACGTTTACAGCAGGGCACAAGATTGGTATTGTTGGAAGAACAGGAAGTGGGAAATCCACTCTTATTAGTGCTTTATTTCGTCTAGTGGAACCAGCAGGAGGGAAAATTATAGTTGATGGACTAGACATATCATCTATTGGCCTTCAAGATTTGAGGTCGCGTTTTGCGATTATACCTCAGGATCCTACCCTATTCAATGGGACTGTAAAATATAACTTGGATCCTTTATCTCAACACACTGATCAAGAGATATGGGAGGTTCTTGGGAAGTGTCAGTTGCGAGAAGTTGTCCAAGGGAAAGAAGAGGGTTTAAACTCCTCAGTTGTTGAAGGTGGATCAAATTGGAGCATGGGACAAAGACAGTTATTTTGTTTAGCGCGCGCTCTTTTGAGGAGAAGTAGGATATTGGTGTTGGATGAAGCAACTGCATCAGTTGATAATTCTACAGATCTGATTCTGCAAAAAATCATTAGGGCTGAGTTTGCAGATTGTACAGTGATCACAGTAGCACACAGGATACCAACTGTGATGGATTGCAATATGGTTCTTTCTATAAGTGATGGAAAATTGGCTGAGTATGATGAGCCCACAAACTTGATGAAGAGAGAAGAATCGTTGTTCAGGAAACTTGTCAAGGAATATCGCTCTTACGTTCAGTCTACCAAATCGGATTGA 4278 0.3789 MDDLWSIICFSVFLLIIMFAFIIMILKTSSRRPFWSLVRYSNLQLVSAITIIFIGLLRLSLGINGWWIDLFHGFTWLLVSLIVSLQIKQLTRAWLWMFSFFMFFVSGVLCSLSMSSYAIGSSELSFNAALDVLSFSGATLLLLCTYQVCTGKSIDESFYAPLNGQINEVDPVSNITPFSKAGFFSKISFWWLNPLMKRGQEKTLVDEDIPKLREFDRAKSCYLSFVEQLNKQKQHESSLYSSVFWTIILCYQREILITGLFALLKVLALTSGPLFLNEFISVAEGNTSFNYQGYILAISLFFIKIIGSVSQRQWYFRSRLVGMKVRSLLNASIYKKILRLSNSARLIHSSGEIINYIIVDAYRIGEFPVWFHQTWTTSLQLCIALVILFRTIGLAILASLAMIILTMLCNARLAKLEHKFQRQLMVAQDERLKASFESFVTMKVLKLYAWETHFKNVVYYLRNVELKLLSAVQLRKAFSVFIVWTSPLLVSAASFLACYFLKVPLHASNVFTIVATLRLIQEPISSIPDVIAVIIEAKVAFSRIVNFLEAPELQRENFKKKCFNDNLKGSISIKCSDFSWEGNASKPTLRNISMEVRHGQKVAICGEVGSGKSTLIATILGEVSKTKGTIDVQGKFAYVSQTAWIQTGTVRENILFGSELDDQRYQETLQKSSLVKDLELLPYGDLTEIGERGVNLSGGQKQRIQLARALYQNADIYLLDDPFSAVDAHTAKNLFNEYIMEGLKGKTLILVTHQVDFLPAFDSILLMSNGEILQSGPYHQLMTSSQEFNNLVNARKETAGSDLLASATFSERHSTSIKSMQASVLKQYKAPNGNQLIHQEEREKGDTGLKPYLQYLNQMKGYILFSTAFLCHLIFVFCQILQNSWMASNVDNPLVSTLRLILVHLLIGGFSTVFLFIRCLLIVTLGLKSSKDLFSQLMNSLFHAPMSFYDSTPLGRILSRVSSDLSIMDLDLPFSLSYSMGATINFYSSLTVLAVVTWQVLIVAIPMVYVVIRMQRYYIASEKEVMRMNGTTKSSLANHVNETVAGAATIRAFEEEDCFFEKNLDLIDINASAFFHSFSSKEWLIQRLEIISAVVLTTGALCMVMLPPGTFTSGIIGMALSYGLSLNNSLVFSIQNQCTLANHIISVERLNQYMHIQSEAKETVEGNRPPLNWPVAGKVKINDLKIRYRPDGPLVLDGITCTFTAGHKIGIVGRTGSGKSTLISALFRLVEPAGGKIIVDGLDISSIGLQDLRSRFAIIPQDPTLFNGTVKYNLDPLSQHTDQEIWEVLGKCQLREVVQGKEEGLNSSVVEGGSNWSMGQRQLFCLARALLRRSRILVLDEATASVDNSTDLILQKIIRAEFADCTVITVAHRIPTVMDCNMVLSISDGKLAEYDEPTNLMKREESLFRKLVKEYRSYVQSTKSD* 1426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr6g1478 1425 CDD ABCC_MRP_domain2 1177 1397 - -
Mtr6g1478 1425 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 573 794 IPR003439 GO:0005524
Mtr6g1478 1425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1169 1412 IPR027417 -
Mtr6g1478 1425 CDD ABC_6TM_ABCC_D1 257 544 IPR044746 GO:0140359
Mtr6g1478 1425 PANTHER ABC TRANSPORTER C FAMILY PROTEIN 62 1424 - -
Mtr6g1478 1425 Gene3D - 1162 1415 IPR027417 -
Mtr6g1478 1425 CDD ABC_6TM_ABCC_D2 865 1154 IPR044726 GO:0140359
Mtr6g1478 1425 Gene3D ABC transporter type 1, transmembrane domain 827 1161 IPR036640 GO:0005524|GO:0016021
Mtr6g1478 1425 Gene3D ABC transporter type 1, transmembrane domain 226 553 IPR036640 GO:0005524|GO:0016021
Mtr6g1478 1425 SMART AAA_5 1205 1397 IPR003593 -
Mtr6g1478 1425 SMART AAA_5 598 771 IPR003593 -
Mtr6g1478 1425 CDD ABCC_MRP_domain1 571 771 - -
Mtr6g1478 1425 Gene3D - 566 800 IPR027417 -
Mtr6g1478 1425 Pfam ABC transporter transmembrane region 865 1122 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g1478 1425 Pfam ABC transporter transmembrane region 256 503 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g1478 1425 Pfam ABC transporter 589 723 IPR003439 GO:0005524
Mtr6g1478 1425 Pfam ABC transporter 1196 1344 IPR003439 GO:0005524
Mtr6g1478 1425 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1179 1413 IPR003439 GO:0005524
Mtr6g1478 1425 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 256 536 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g1478 1425 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 565 793 IPR027417 -
Mtr6g1478 1425 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 868 1142 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mtr6g1478 1425 ProSitePatterns ABC transporters family signature. 696 710 IPR017871 GO:0005524
Mtr6g1478 1425 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 62 1424 - -
Mtr6g1478 1425 SUPERFAMILY ABC transporter transmembrane region 852 1159 IPR036640 GO:0005524|GO:0016021
Mtr6g1478 1425 SUPERFAMILY ABC transporter transmembrane region 244 549 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr6g1478 Mtr-Chr6 24643745 24651053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr6g1478 543 827 Calmodulin-binding Proteins AT2G36910 28.289 3.90e-25 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr6g1478 K05666 - gmx:100787314 2051.94